Challenges and solutions to rice biological data curation at IRRI
Material type:
TextLanguage: English Publication details: Tokyo (Japan) : International Society of Biocuration, 2010.Description: 1 pageSubject(s):
In:
Biocuration 2010 : The Conference of the International Society for Biocuration & The 4th International Biocuration Conference, 11-14 October 2010 AIST Tokyo Waterfront & Tokyo International Exchange Center Odaiba, Tokyo p. 88Summary: The International Rice Research Institute (IRRI) hosts an ambitious scope of rice germplasm research|generating a diversity of rice biological data including structural and functional genomics, breeding and|phenotypic data. Systematic documentation and publication of such data, cross-linked to related|information in public online international plant databases is a major institutional challenge.|In this poster, we give a broad overview of data sets under curation at IRRI, highlighting key curatorial|issues including semantic codification (?rice ontology?), database representation, analysis protocols and end|user tools. In particular, we will show the ongoing evolution of germplasm genotype and phenotype data, in|its relation to genetic and genomic information available from public plant genome projects, by direct|comparison to the rice genome, or indirect comparative analysis to other plant species.
| Item type | Current library | Collection | Call number | Status | Date due | Barcode | Item holds | |
|---|---|---|---|---|---|---|---|---|
| Abstract or summary | CIMMYT Knowledge Center: John Woolston Library | CIMMYT Staff Publications Collection | CIS-6124 (Browse shelf(Opens below)) | Available |
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Abstract only
The International Rice Research Institute (IRRI) hosts an ambitious scope of rice germplasm research|generating a diversity of rice biological data including structural and functional genomics, breeding and|phenotypic data. Systematic documentation and publication of such data, cross-linked to related|information in public online international plant databases is a major institutional challenge.|In this poster, we give a broad overview of data sets under curation at IRRI, highlighting key curatorial|issues including semantic codification (?rice ontology?), database representation, analysis protocols and end|user tools. In particular, we will show the ongoing evolution of germplasm genotype and phenotype data, in|its relation to genetic and genomic information available from public plant genome projects, by direct|comparison to the rice genome, or indirect comparative analysis to other plant species.
Genetic Resources Program
Text in English
Ulat, V.J. : No CIMMYT Affiliation
INT2832
CIMMYT Staff Publications Collection
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