Knowledge Center Catalog

Application of multi-layer neural network and hyperspectral reflectance in genome-wide association study for grain yield in bread wheat (Record no. 65758)

MARC details
000 -LEADER
fixed length control field 03229nab|a22004217a|4500
001 - CONTROL NUMBER
control field 65758
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20231009164120.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 20221s2022||||mx |||p|op||||00||0|eng|d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 0378-4290
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
Source 1872-6852 (Online)
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1016/j.fcr.2022.108730
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Fei, S.
9 (RLIN) 28380
245 10 - TITLE STATEMENT
Title Application of multi-layer neural network and hyperspectral reflectance in genome-wide association study for grain yield in bread wheat
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Name of publisher, distributor, etc. Elsevier,
Date of publication, distribution, etc. 2022.
Place of publication, distribution, etc. Amsterdam (Netherlands) :
520 ## - SUMMARY, ETC.
Summary, etc. Grain yield (GY) is a primary trait for phenotype selection in crop breeding. Rapid and cost-effective prediction of GY before harvest from remote sensing platforms can be integrated with practical breeding activities. In this study, a natural population containing 166 wheat cultivars and elite lines was used for time-series prediction of GY using ground-based hyperspectral remote sensing. Canopy hyperspectral data (350–2500 nm) was collected at the flowering, early grain-filling (EGF), mid grain-filling (MGF), and late grain-filling (LGF) stages under four environments. GY was predicted by using full bands reflectance as input of multi-layer neural network. Genome-wide association study (GWAS) was performed using 373,106 markers from 660 K and 90 K single-nucleotide polymorphism (SNP) arrays in 166 wheat genotypes. Prediction accuracy for GY characterized by R2 values were 0.68, 0.69, 0.76, and 0.65 at flowering, EGF, MGF, and LGF, respectively. Among the 26 loci identified by predicted GY, 13 were located in similar positions to previously reported loci related to yield, and another 13 were potentially new loci. Linear regression (R2) ranged from 0.87 to 0.94 indicating that distinct cumulative effects of favorable alleles detected by predicted GY were increasing as compared to measured GY. This study highlights the feasibility of combining remote sensing with machine learning for wheat breeding decisions and to understand the underlying genetic basis of crop yield.
546 ## - LANGUAGE NOTE
Language note Text in English
591 ## - CATALOGING NOTES
Affiliation Rasheed, A. : No CIMMYT Affiliation
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Remote sensing
Source of heading or term AGROVOC
9 (RLIN) 1986
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Wheat
Source of heading or term AGROVOC
9 (RLIN) 1310
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Yields
Source of heading or term AGROVOC
9 (RLIN) 1313
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genomes
Source of heading or term AGROVOC
9 (RLIN) 1131
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Quantitative Trait Loci
Source of heading or term AGROVOC
9 (RLIN) 1853
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Hassan, M.A.
9 (RLIN) 7723
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Yonggui Xiao
9 (RLIN) 1687
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Awais Rasheed
Miscellaneous information Global Wheat Program
Field link and sequence number I1706474
9 (RLIN) 1938
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Xianchun Xia
9 (RLIN) 377
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Ma, Y.
9 (RLIN) 29186
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Luping Fu
9 (RLIN) 5903
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Zhen Chen
9 (RLIN) 19674
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name He Zhonghu
Miscellaneous information Global Wheat Program
Field link and sequence number INT2411
9 (RLIN) 838
773 0# - HOST ITEM ENTRY
Title Field Crops Research
Place, publisher, and date of publication Amsterdam (Netherlands) : Elsevier, 2022.
Related parts v. 289, art. 108730
Record control number G444314
International Standard Serial Number 0378-4290
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Suppress in OPAC No
Source of classification or shelving scheme Dewey Decimal Classification
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
11/25/2022   11/25/2022 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 11/25/2022

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