| 000 | 07298nab|a22018137a|4500 | ||
|---|---|---|---|
| 001 | 69719 | ||
| 003 | MX-TxCIM | ||
| 005 | 20260108100602.0 | ||
| 008 | 251215s2025 xxk||||| |||| 00| 0 eng d | ||
| 022 | _a2041-1723 (Online) | ||
| 024 | 8 | _ahttps://doi.org/10.1038/s41467-025-64046-1 | |
| 040 | _aMX-TxCIM | ||
| 041 | _aeng | ||
| 100 | 1 |
_aWhite, B. _940955 |
|
| 245 | 1 | 0 | _aDe novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome |
| 260 |
_aUnited Kingdom : _bNature Publishing Group, _c2025. |
||
| 500 | _aPeer review | ||
| 500 | _aOpen Access | ||
| 520 | _aWheat is the most widely cultivated crop in the world, with over 215 million hectares grown annually. The 10+ Wheat Genomes Project recently sequenced and assembled to chromosome-level the genomes of nine wheat cultivars, uncovering genetic diversity and selection within the pan-genome of wheat. Here, we provide a wheat pan-transcriptome with de novo annotation and differential expression analysis for these wheat cultivars across multiple tissues. Using the de novo annotations we identify cultivar-specific genes and define the core and dispensable genomes. Expression analysis across cultivars and tissues reveals conservation in expression between a large core set of homeologous genes, in addition to widespread changes in subgenome homeolog expression bias between cultivars and cultivar-specific expression profiles. We utilise both the newly constructed gene-based wheat pan-genome and pan-transcriptome, demonstrating variation in the prolamin superfamily and immune-reactive proteins across cultivars. | ||
| 546 | _aText in English | ||
| 591 | _aGardner, K.A. : No CIMMYT Affiliation | ||
| 591 | _aFradgley, N. S. : No CIMMYT Affiliation | ||
| 597 |
_fBreeding for Tomorrow _dBiotechnology and Biological Sciences Research Council (BBSRC) _dEarlham Institute _dNorwich Research Park _dAustralian Research Council (ARC) _dCoeliac Australia _dSwiss National Science Foundation (SNSF) _dJapan Science and Technology Agency (JST) _dUniversity of Zurich _dFederal Ministry of Education and Research (BMBF) _uhttps://hdl.handle.net/10568/179274 |
||
| 650 | 7 |
_aWheat _2AGROVOC _91310 |
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| 650 | 7 |
_aGene Expression _2AGROVOC _98835 |
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| 650 | 7 |
_aPlant breeding _2AGROVOC _91203 |
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| 650 | 7 |
_aTranscriptomics _2AGROVOC _930116 |
|
| 700 | 1 |
_aLux, T. _917359 |
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| 700 | 1 |
_aRusholme-Pilcher, R. _940971 |
|
| 700 | 1 |
_aJuhász, A. _940972 |
|
| 700 | 1 |
_aKaithakottil, G. _940973 |
|
| 700 | 1 |
_aDuncan, S. _940974 |
|
| 700 | 1 |
_aSimmonds, J. _91420 |
|
| 700 | 1 |
_aRees, H. _940975 |
|
| 700 | 1 |
_aWright, J. _940976 |
|
| 700 | 1 |
_aColmer, J. _940977 |
|
| 700 | 1 |
_aWard, S. _940978 |
|
| 700 | 1 |
_aJoynson, R. _94774 |
|
| 700 | 1 |
_aCoombes, B. _918877 |
|
| 700 | 1 |
_aIrish, N. _940979 |
|
| 700 | 1 |
_aHenderson, S. _940980 |
|
| 700 | 1 |
_aBarker, T. _940981 |
|
| 700 | 1 |
_aChapman, H. _940982 |
|
| 700 | 1 |
_aCatchpole, L. _99903 |
|
| 700 | 1 |
_aGharbi, K. _940983 |
|
| 700 | 1 |
_aBose, U. _940984 |
|
| 700 | 1 |
_aMoeko Okada _940986 |
|
| 700 | 1 |
_aHanda, H. _91970 |
|
| 700 | 0 |
_aShuhei Nasuda _917424 |
|
| 700 | 0 |
_aKentaro K. Shimizu _917430 |
|
| 700 | 1 |
_aGundlach, H. _917378 |
|
| 700 | 1 |
_aLang, D. _927246 |
|
| 700 | 1 |
_aNaamati, G. _922811 |
|
| 700 | 1 |
_aLegg, E. _917427 |
|
| 700 | 1 |
_aBharti, A. _917428 |
|
| 700 | 1 |
_aColgrave, M.L. _940988 |
|
| 700 | 1 |
_aHaerty, W. _940989 |
|
| 700 | 1 |
_aUauy, C. _99600 |
|
| 700 | 1 |
_aSwarbreck, D. _917415 |
|
| 700 | 1 |
_aBorrill, P. _922802 |
|
| 700 | 1 |
_aPoland, J.A. _92092 |
|
| 700 | 1 |
_aKrattinger, S.G. _917429 |
|
| 700 | 1 |
_aStein, N. _92403 |
|
| 700 | 1 |
_aMayer, K.F.X. _917431 |
|
| 700 | 1 |
_aPozniak, C.J. _93065 |
|
| 700 |
_aWalkowiak, S. _97329 |
||
| 700 | 1 |
_aKlymiuk, V. _917376 |
|
| 700 | 1 |
_aByrns, B. _917377 |
|
| 700 |
_aNilsen, K. _97330 |
||
| 700 | 1 |
_aEns, J. _917386 |
|
| 700 | 1 |
_aWiebe, K. _917387 |
|
| 700 | 1 |
_aN’Diaye, A. _93087 |
|
| 700 | 1 |
_aHucl, P.J. _917426 |
|
| 700 | 0 |
_aBin Xiao Fu _917391 |
|
| 700 | 0 |
_aLiangliang Gao _99094 |
|
| 700 | 1 |
_aDelorean, E. _917374 |
|
| 700 | 0 |
_aDal‑Hoe Koo _917357 |
|
| 700 | 1 |
_aFritz, A.K. _93758 |
|
| 700 | 1 |
_aMonat, C. _917363 |
|
| 700 | 1 |
_aHimmelbach, A. _92391 |
|
| 700 | 1 |
_aFiebig, A. _917389 |
|
| 700 | 1 |
_aPadmarasu, S. _917410 |
|
| 700 | 1 |
_aScholz, U. _917412 |
|
| 700 | 1 |
_aMascher, M. _92390 |
|
| 700 | 1 |
_aHaberer, G. _917370 |
|
| 700 | 1 |
_aGundlach, H. _917378 |
|
| 700 | 1 |
_aSpannagl, M. _917362 |
|
| 700 | 1 |
_aKassa, M.T. _917371 |
|
| 700 | 1 |
_aFobert, P. _97980 |
|
| 700 | 1 |
_aKagale, S. _917411 |
|
| 700 | 1 |
_aBrinton, J. _93638 |
|
| 700 | 1 |
_aRamirez-Gonzalez, R.H. _917372 |
|
| 700 | 1 |
_aBevan, M. _917384 |
|
| 700 | 1 |
_aMcKenzie, N. _917406 |
|
| 700 | 1 |
_aSteuernagel, B. _911583 |
|
| 700 | 1 |
_aKolodziej, M.C. _917373 |
|
| 700 | 1 |
_aKeller, B. _91680 |
|
| 700 | 1 |
_aWicker, T. _91678 |
|
| 700 | 1 |
_aThambugala, D. _917375 |
|
| 700 | 1 |
_aMcCartney, C. _95870 |
|
| 700 | 1 |
_aBandi, V. _917379 |
|
| 700 | 1 |
_aNunez Siri, J. _917380 |
|
| 700 | 1 |
_aGutwin, C. _917388 |
|
| 700 | 1 |
_aAquino, C. _917381 |
|
| 700 | 0 |
_aMasaomi Hatakeyama _917397 |
|
| 700 | 1 |
_aCopetti, D. _917382 |
|
| 700 | 1 |
_aHalstead-Nussloch, G. _917396 |
|
| 700 | 1 |
_aPaape, T. _917409 |
|
| 700 | 1 |
_aShimizu-Inatsugi, R. _917414 |
|
| 700 | 1 |
_aBan, T. _9424 |
|
| 700 | 0 |
_aKanako Kawaura _917402 |
|
| 700 | 0 |
_aToshiaki Tameshige _917417 |
|
| 700 | 0 |
_aHiroyuki Tsuji _917419 |
|
| 700 | 1 |
_aVenturini, L. _917383 |
|
| 700 | 1 |
_aClark, M. _95990 |
|
| 700 | 1 |
_aClavijo, B. _917385 |
|
| 700 | 1 |
_aFosker, C. _917390 |
|
| 700 | 1 |
_aGarcia Accinelli, G. _917392 |
|
| 700 | 1 |
_aHeavens, D. _917401 |
|
| 700 | 1 |
_aKrasileva, K. _917404 |
|
| 700 | 1 |
_aHall, A.J.W. _92883 |
|
| 700 | 1 |
_aGardner, K.A. _8001712617 _gGenetic Resources Program _917393 |
|
| 700 | 1 |
_aFradgley, N. S. _8001713762 _gGlobal Wheat Program _917394 |
|
| 700 | 1 |
_aPercival-Alwyn, L. _915955 |
|
| 700 | 1 |
_aCockram, J. _917416 |
|
| 700 | 1 |
_aGutierrez-Gonzalez, J. _917395 |
|
| 700 | 1 |
_aMuehlbauer, G.J. _917364 |
|
| 700 | 0 |
_aChu Shin Koh _917398 |
|
| 700 | 1 |
_aSharpe, A.G. _95869 |
|
| 700 | 1 |
_aDeek, J. _917399 |
|
| 700 | 1 |
_aCostamagna, A.C. _917400 |
|
| 700 | 0 |
_aHiroyuki Kanamori _92396 |
|
| 700 | 0 |
_aFuminori Kobayashi _917403 |
|
| 700 | 0 |
_aTsuyoshi Tanaka _917418 |
|
| 700 | 0 |
_aJianzhong Wu _917420 |
|
| 700 | 1 |
_aKuo, T. _917405 |
|
| 700 | 0 |
_aJun Sese _917413 |
|
| 700 | 0 |
_aKazuki Murata _917407 |
|
| 700 | 0 |
_aYusuke Nabeka _917408 |
|
| 700 | 1 |
_aJULIANA P. _8001710082 _gFormerly Global Wheat Program _gFormerly BISA _92690 |
|
| 700 | 1 |
_aSingh, R.P. _gFormerly Global Wheat Program _8INT0610 _9825 |
|
| 700 | 1 |
_aBudak, H. _99901 |
|
| 700 | 1 |
_aSmall, I. _917421 |
|
| 700 | 1 |
_aMelonek, J. _917425 |
|
| 700 | 1 |
_aCloutier, S. _911642 |
|
| 700 | 1 |
_aKeeble-Gagnère, G. _917422 |
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| 700 | 1 |
_aTibbets, J. _917423 |
|
| 700 | 1 |
_aLangridge, P. _98803 |
|
| 700 | 1 |
_aChalmers, K. _92356 |
|
| 700 | 1 |
_aDistelfeld, A. _93082 |
|
| 773 | 0 |
_tNature Communications _gv. 16, art. 8538 _dLondon (United Kingdom) : Nature Publishing Group, 2025. _x2041-1723 _w57824 |
|
| 856 | 4 |
_yOpen Access through DSpace _uhttps://hdl.handle.net/10883/36432 |
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| 942 |
_cJA _n0 _2ddc |
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| 999 |
_c69719 _d69711 |
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