000 03585nab|a22004097a|4500
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008 20217s2021||||sz |||p|op||||00||0|eng|d
022 _a1664-462X (Online)
024 8 _ahttps://doi.org/10.3389/fpls.2021.658267
040 _aMX-TxCIM
041 _aeng
100 1 _aFritsche-Neto, R.
_96507
245 1 0 _aOptimizing genomic-enabled prediction in small-scale maize hybrid breeding programs :
_ba roadmap review
260 _aSwitzerland :
_bFrontiers,
_c2021.
500 _aPeer review
500 _aOpen Access
520 _aThe usefulness of genomic prediction (GP) for many animal and plant breeding programs has been highlighted for many studies in the last 20 years. In maize breeding programs, mostly dedicated to delivering more highly adapted and productive hybrids, this approach has been proved successful for both large- and small-scale breeding programs worldwide. Here, we present some of the strategies developed to improve the accuracy of GP in tropical maize, focusing on its use under low budget and small-scale conditions achieved for most of the hybrid breeding programs in developing countries. We highlight the most important outcomes obtained by the University of São Paulo (USP, Brazil) and how they can improve the accuracy of prediction in tropical maize hybrids. Our roadmap starts with the efforts for germplasm characterization, moving on to the practices for mating design, and the selection of the genotypes that are used to compose the training population in field phenotyping trials. Factors including population structure and the importance of non-additive effects (dominance and epistasis) controlling the desired trait are also outlined. Finally, we explain how the source of the molecular markers, environmental, and the modeling of genotype–environment interaction can affect the accuracy of GP. Results of 7 years of research in a public maize hybrid breeding program under tropical conditions are discussed, and with the great advances that have been made, we find that what is yet to come is exciting. The use of open-source software for the quality control of molecular markers, implementing GP, and envirotyping pipelines may reduce costs in an efficient computational manner. We conclude that exploring new models/tools using high-throughput phenotyping data along with large-scale envirotyping may bring more resolution and realism when predicting genotype performances. Despite the initial costs, mostly for genotyping, the GP platforms in combination with these other data sources can be a cost-effective approach for predicting the performance of maize hybrids for a large set of growing conditions.
546 _aText in English
650 7 _aQuantitative genetics
_2AGROVOC
_91233
650 7 _aMarker-assisted selection
_2AGROVOC
_910737
650 7 _aBreeding programmes
_2AGROVOC
_921704
700 1 _aGalli, G.
_98650
700 1 _aBorges, K.L.R.
_921705
700 1 _915939
_aCosta-Neto, G.
_8001712813
_gGenetic Resources Program
700 1 _aAlves, F.C.
_98651
700 1 _aSabadin, F.
_921706
700 1 _aLyra, D.H.
_919851
700 1 _aMorais, P.P.P.
_921707
700 1 _aBraatz de Andrade, L.R.
_921708
700 1 _aGranato, I.
_97519
700 1 _aCrossa, J.
_gGenetic Resources Program
_8CCJL01
_959
773 0 _tFrontiers in Plant Science
_gv. 12, art. 658267
_dSwitzerland : Frontiers, 2021.
_w56875
_x1664-462X
856 4 _yOpen Access through DSpace
_uhttps://hdl.handle.net/10883/21594
942 _cJA
_n0
_2ddc