| 000 | 03158nab a22003977a 4500 | ||
|---|---|---|---|
| 999 |
_c56925 _d56917 |
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| 001 | 56925 | ||
| 003 | MX-TxCIM | ||
| 005 | 20230105211133.0 | ||
| 008 | 150722s2015 ne |||p|op||| 00| 0 eng d | ||
| 024 | 8 | _ahttps://doi.org/10.1016/j.cj.2015.01.001 | |
| 040 | _aMX-TxCIM | ||
| 041 | _aeng | ||
| 100 | 1 |
_91395 _aMeng, L. |
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| 245 | 1 | 0 |
_aQTL IciMapping : _bIntegrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations |
| 260 |
_aNetherlands: _bElsevier, _c2015. |
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| 500 | _aOpen Access | ||
| 500 | _aPeer review | ||
| 520 | _aQTL IciMapping is freely available public software capable of building high-density linkage maps and mapping quantitative trait loci (QTL) in biparental populations. Eight functionalities are integrated in this software package: (1) BIN: binning of redundant markers; (2) MAP: construction of linkage maps in biparental populations; (3) CMP: consensus map construction from multiple linkage maps sharing common markers; (4) SDL: mapping of segregation distortion loci; (5) BIP: mapping of additive, dominant, and digenic epistasis genes; (6) MET: QTL-by-environment interaction analysis; (7) CSL: mapping of additive and digenic epistasis genes with chromosome segment substitution lines; and (8) NAM: QTL mapping in NAM populations. Input files can be arranged in plain text, MS Excel 2003, or MS Excel 2007 formats. Output files have the same prefix name as the input but with different extensions. As examples, there are two output files in BIN, one for summarizing the identified bin groups and deleted markers in each bin, and the other for using the MAP functionality. Eight output files are generated by MAP, including summary of the completed linkage maps, Mendelian ratio test of individual markers, estimates of recombination frequencies, LOD scores, and genetic distances, and the input files for using the BIP, SDL, and MET functionalities. More than 30 output files are generated by BIP, including results at all scanning positions, identified QTL, permutation tests, and detection powers for up to six mapping methods. Three supplementary tools have also been developed to display completed genetic linkage maps, to estimate recombination frequency between two loci, and to perform analysis of variance for multi-environmental trials. | ||
| 536 | _aGenetic Resources Program | ||
| 546 | _aText in english | ||
| 591 | _bCIMMYT Informa No. 1944 | ||
| 594 | _aCLIH01 | ||
| 594 | _aINT2542 | ||
| 650 | 7 |
_91396 _aBiparental populations |
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| 650 | 7 |
_91853 _aQuantitative Trait Loci _2AGROVOC |
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| 650 | 7 |
_93719 _aSoftware development _2AGROVOC |
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| 650 | 7 |
_94190 _aGenetic maps _gAGROVOC |
|
| 650 | 0 |
_aDNA Sequences _gAGROVOC _98666 |
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| 650 | 7 |
_91230 _aQTL mapping |
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| 700 | 1 |
_91387 _aLuyan Zhang |
|
| 700 | 1 |
_9764 _aHuihui Li _gGenetic Resources Program _8CLIH01 |
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| 700 | 1 |
_9842 _aJiankang Wang _gGenetic Resources Program _8INT2542 |
|
| 773 | 0 |
_wu56924 _x2214-5141 (Online) _dNetherlands: Elsevier _tThe Crop Journal _gv. 3, no. 3, p. 269-283 |
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| 856 | 4 |
_yOpen Access through DSpace _uhttp://hdl.handle.net/10883/4536 |
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| 942 |
_2ddc _cJA _n0 |
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