000			03662nab a22006377a 4500
001			G97676
003			MX-TxCIM
005			20220428180414.0
008			220428s2013 xxk|||p|op||| 00| 0 eng d
022			_a1471-9053 (Online)
022	0		_a0032-0781
024	8		_ahttps://doi.org/10.1093/pcp/pcs163
040			_aMX-TxCIM
041			_aeng
090			_aCIS-7032
100	1		_aCooper, L. _95922
245	1	4	_aThe plant ontology as a tool for comparative plant anatomy and genomic analyses
260			_aUnited Kingdom : _bOxford University Press, _c2013.
500			_aPeer-review: Yes - Open Access: Yes|http://science.thomsonreuters.com/cgi-bin/jrnlst/jlresults.cgi?PC=MASTER&ISSN=0032-0781
500			_aPeer review
500			_aOpen Access
520			_aThe Plant Ontology (PO; http://www.plantontology.org/) is a publicly-available, collaborative effort to develop and maintain a controlled, structured vocabulary (?ontology?) of terms to describe plant anatomy, morphology and the stages of plant development. The goals of the PO are to link (annotate) gene expression and phenotype data to plant structures and stages of plant development, using the data model adopted by the Gene Ontology. From its original design covering only rice, maize and Arabidopsis, the scope of the PO has been expanded to include all green plants. The PO was the first multi-species anatomy ontology developed for the annotation of genes and phenotypes. Also, to our knowledge, it was one of the first biological ontology that provides translations (via synonyms) in non-English languages such as Japanese and Spanish. As of Release #18 (July 2012), there are about 2.2 million annotations linking PO terms to over 110,000 unique data objects representing genes or gene models, proteins, RNAs, germplasm and Quantitative Traits Loci (QTLs) from 22 plant species. In this paper, we focus on the plant anatomical entity branch of the PO, describing the organizing principles, resources available to users, and examples of how the PO is integrated into other plant genomics databases and web portals. We also provide two examples of comparative analyses, demonstrating how the ontology structure and PO-annotated data can be used to discover the patterns of expression of the LEAFY (LFY) and terpene synthase (TPS) gene homologs.
536			_aGenetic Resources Program
546			_aText in English
591			_aCIMMYT Informa No. 1841|Oxford
594			_aINT2832
595			_aCSC
650		7	_aBioinformatics _2AGROVOC _98703
650		7	_aGenomics _2AGROVOC _91132
650		7	_aOntology _2AGROVOC _98810
650		7	_aPlant anatomy _2AGROVOC _91202
700			_910182 _aWalls, R.
700	1		_927239 _aElser, J.
700	1		_927240 _aGandolfo, M.A.
700	1		_927241 _aStevenson, D.W.
700	1		_927242 _a Smith, B.
700	1		_927243 _aPreece, J.
700	1		_927244 _aAthreya, B.
700	1		_916133 _aMungall, C.J.
700	1		_925946 _aRensing, S.
700	1		_927245 _aHiss, M.
700	1		_927246 _aLang, D.
700	1		_913417 _aReski, R.
700	1		_927247 _aBerardini, T.Z.
700	0		_927248 _aDonghui Li
700	1		_927249 _aHuala, E.
700	1		_927250 _aSchaeffer, M.
700	1		_916139 _aMenda, N.
700	1		_94903 _aArnaud, E.
700	1		_9864 _aShrestha, R. _gGenetic Resources Program _8INT2832
700	0		_927251 _aYukiko Yamazaki
700	1		_916131 _aJaiswal, P.
773	0		_tPlant and Cell Physiology _gv. 54, no. 2, p. 1-23 _dUnited Kingdom : Oxford University Press, 2013. _wG444680 _x0032-0781
856	4		_uhttp://hdl.handle.net/10883/1918 _yOpen Access through DSpace
942			_cJA _2ddc _n0
999			_c29851 _d29851