TY - JA AU - Murithi,A. AU - Gayathri Panangipalli AU - Zhengyu Wen AU - Olsen,M. AU - Lübberstedt,T. AU - Dhugga,K. AU - Jung,M. TI - Global transcriptomic analysis of inbred lines reveal candidate genes for response to maize lethal necrosis SN - 2223-7747 PY - 2025/// CY - Switzerland PB - MDPI, KW - Disease resistance KW - AGROVOC KW - Gene Expression KW - Maize KW - Maize chlorotic mottle virus KW - Necrosis KW - RNA Sequence KW - Sugarcane mosaic virus KW - Plant viruses KW - Genetic resistance N1 - Peer review; Open access N2 - Maize lethal necrosis (MLN) is a significant threat to food security in Sub-Saharan Africa (SSA), with limited commercial inbred lines displaying tolerance. This study analyzed the transcriptomes of four commercially used maize inbred lines and a non-adapted inbred line, all with varying response levels to MLN. RNA-Seq revealed differentially expressed genes in response to infection by maize chlorotic mottle virus (MCMV) and sugarcane mosaic virus (SCMV), the causative agents of MLN. Key findings included the identification of components of the plant innate immune system, such as differentially regulated R genes (mainly LRRs), and activation/deactivation of virus resistance pathways, including RNA interference (RNAi) via Argonaute (AGO), Dicer-like proteins, and the ubiquitin–proteasome system (UPS) via RING/U-box and ubiquitin ligases. Genes associated with redox signaling, WRKY transcription factors, and cell modification were also differentially expressed. Additionally, the expression of translation initiation and elongation factors, eIF4E and eIF4G, correlated with the presence of MLN viruses. These findings provide valuable insights into the molecular mechanisms of MLN resistance and highlight potential gene candidates for engineering or selecting MLN-resistant maize germplasm for SSA UR - https://hdl.handle.net/10883/35474 T2 - Plants DO - https://doi.org/10.3390/plants14020295 ER -