TY  - JA
AU  - Gandham,P.
AU  - Vadla,N.
AU  - Saji,A.
AU  - Srinivas,V.
AU  - Ruperao,P.
AU  - Selvanayagam,S.
AU  - Saxena,R.K.
AU  - Rathore,A.
AU  - Gopalakrishnan,S.
AU  - Thakur,V.
TI  - Genome assembly, comparative genomics, and identification of genes/pathways underlying plant growth-promoting traits of an actinobacterial strain, Amycolatopsis sp. (BCA-696)
SN  - 2045-2322
PY  - 2024///
CY  - London (United Kingdom)
PB  - Nature Publishing Group
KW  - Fungicides
KW  - AGROVOC
KW  - Bacterial genomes
KW  - Immunity
KW  - Rhizobacteria
KW  - Symbiosis
N1  - Peer review; Open Access
N2  - The draft genome sequence of an agriculturally important actinobacterial species Amycolatopsis sp. BCA-696 was developed and characterized in this study. Amycolatopsis BCA-696 is known for its biocontrol properties against charcoal rot and also for plant growth-promotion (PGP) in several crop species. The next-generation sequencing (NGS)-based draft genome of Amycolatopsis sp. BCA-696 comprised of similar to 9.05 Mb linear chromosome with 68.75% GC content. In total, 8716 protein-coding sequences and 61 RNA-coding sequences were predicted in the genome. This newly developed genome sequence has been also characterized for biosynthetic gene clusters (BGCs) and biosynthetic pathways. Furthermore, we have also reported that the Amycolatopsis sp. BCA-696 produces the glycopeptide antibiotic vancomycin that inhibits the growth of pathogenic gram-positive bacteria. A comparative analysis of the BCA-696 genome with publicly available closely related genomes of 14 strains of Amycolatopsis has also been conducted. The comparative analysis has identified a total of 4733 core and 466 unique orthologous genes present in the BCA-696 genome The unique genes present in BCA-696 was enriched with antibiotic biosynthesis and resistance functions. Genome assembly of the BCA-696 has also provided genes involved in key pathways related to PGP and biocontrol traits such as siderophores, chitinase, and cellulase production
UR  - https://hdl.handle.net/10883/34647
T2  - Scientific Reports
DO  - https://doi.org/10.1038/s41598-024-66835-y
ER  -