TY  - JA
AU  - Kunhui He
AU  - ShuTu Xu
AU  - Xinghua Zhang
AU  - Yanan Li
AU  - Liguo Chang
AU  - Yahui Wang
AU  - Yaqin Shi
AU  - Tingting Cui
AU  - Yuan Dong
AU  - Tianru Lan
AU  - Xueyan Liu
AU  - Yutang Du
AU  - Renhe Zhang
AU  - Jianchao Liu
AU  - Jiquan Xue
TI  - Mining of candidate genes for nitrogen use efficiency in maize based on genome-wide association study
SN  - 1380-3743
PY  - 2020///
CY  - Dordrecht (Netherlands)
PB  - Springer
KW  - Maize
KW  - AGROVOC
KW  - Nitrogen
KW  - Single nucleotide polymorphisms
KW  - Genes
N1  - Peer review
N2  - Improving the nitrogen use efficiency (NUE) may considerably increase maize yield and decrease the use of nitrogen (N) fertilizer. But the genetic basis of NUE in maize is still poorly understood. In this study, an association panel of 139 maize inbred lines genotyped with 50,790 single nucleotide polymorphism (SNP) was used to dissect the genetic basis of NUE-related traits by genome-wide association study (GWAS). NUE, N uptake efficiency (NupE), N utilization efficiency (NutE), grain N concentration (GNC), stover N concentration (SNC) and N harvest index (NHI) were estimated under two N levels. GWAS was performed using a fixed and random model circulating probability unification (FarmCUP) method. In total, 27 and 23 significant SNP-traits association signals were identified under normal and low N levels. In addition, 10 significant association signals were detected based on the traits relative value (normal N supply / low N supply) of two N levels. Further, 60 candidate genes were predicted for these traits base on linkage disequilibrium (LD) and low nitrogen transcriptome analysis of significant SNP regions. Among the candidate genes identified in this study, 66.7% involved in nitrogen compound metabolic process. Zm00001d025831 and Zm00001d004633 encoded ammonium transporter1 and transmembrane amino acid transporter family protein, respectively, may be important candidate genes for NUE. The markers identified in this study maybe has important significance and could be useful in molecular marker assisted selection in breeding of high-NUE maize varieties, and the candidate genes could deepen the understanding of the genetic basis of NUE
T2  - Molecular Breeding
DO  - https://doi.org/10.1007/s11032-020-01163-3
ER  -