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Fast-forwarding plant breeding with deep learning-based genomic prediction

By: Contributor(s): Material type: ArticleLanguage: English Publication details: United Kingdom : John Wiley & Sons Australia, 2025.ISSN:
  • 1672-9072
  • 1744-7909 (Online)
Subject(s): Online resources: In: Journal of Integrative Plant Biology United Kingdom : John Wiley & Sons Australia, 2025. v. 67, no. 7, p. 1700-1705Summary: Deep learning-based genomic prediction (DL-based GP) has shown promising performance compared to traditional GP methods in plant breeding, particularly in handling large, complex multi-omics data sets. However, the effective development and widespread adoption of DL-based GP still face substantial challenges, including the need for large, high-quality data sets, inconsistencies in performance benchmarking, and the integration of environmental factors. Here, we summarize the key obstacles impeding the development of DL-based GP models and propose future developing directions, such as modular approaches, data augmentation, and advanced attention mechanisms.
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Deep learning-based genomic prediction (DL-based GP) has shown promising performance compared to traditional GP methods in plant breeding, particularly in handling large, complex multi-omics data sets. However, the effective development and widespread adoption of DL-based GP still face substantial challenges, including the need for large, high-quality data sets, inconsistencies in performance benchmarking, and the integration of environmental factors. Here, we summarize the key obstacles impeding the development of DL-based GP models and propose future developing directions, such as modular approaches, data augmentation, and advanced attention mechanisms.

Text in English

Awais Rasheed : No CIMMYT Affiliation

National Natural Science Foundation of China Chinese Academy of Agricultural Sciences (CAAS) Breeding for Tomorrow

https://hdl.handle.net/10568/179111

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