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Modeling QTLS and QTL x E using factorial regression models and partial least squares techniques

By: Contributor(s): Material type: ArticleArticleLanguage: English Publication details: Chapingo (Mexico) : SOMEFI, 2000.ISBN:
  • 968-839-313-4
Subject(s): Online resources: In: Simposium Interacción Genotipo x Ambiente p. 43-60Summary: Multiplicative models for the analysis of phenotypic responses over environments including GxE, characteristically describe phenotypic responses in terms of differential genotypic sensitivity to various forms of environmental characterization. Regression models for QTL analysis have a structure that is fully compatible with the structure of such multiplicative models. A synthesis of multiplicative models for the description of phenotypic responses and regression models for QTL analysis is presented that covers a wide range of applications and needs for the analysis of GxE and QTLxE. Within this framework, marked based regression, interval mapping and composite interval mapping are described. Special attention is given to testing of QTL- and QTLxE effects, with a solution to the problem of multiple testing being based on a permutation procedure.
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Multiplicative models for the analysis of phenotypic responses over environments including GxE, characteristically describe phenotypic responses in terms of differential genotypic sensitivity to various forms of environmental characterization. Regression models for QTL analysis have a structure that is fully compatible with the structure of such multiplicative models. A synthesis of multiplicative models for the description of phenotypic responses and regression models for QTL analysis is presented that covers a wide range of applications and needs for the analysis of GxE and QTLxE. Within this framework, marked based regression, interval mapping and composite interval mapping are described. Special attention is given to testing of QTL- and QTLxE effects, with a solution to the problem of multiple testing being based on a permutation procedure.

Generation Challenge Program|Genetic Resources Program

Text in English

AL-Biometrics Program|AL-Maize Program|AL-Wheat program|EE|R99-00CIMPU|0010|3

INT1991|CCJL01

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