Knowledge Center Catalog

Gene sketch of Ae. tauschii, the D genome donor of common wheat (Record no. 8079)

MARC details
000 -LEADER
fixed length control field 03241nam a22005537a 4500
001 - CONTROL NUMBER
control field G94878
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20211006082355.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 121211s ||||f| 0 p|p||0|| |
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) CIS-6269
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Jizeng Jia
Affiliation International Triticeae Mapping Initiative 20; Wheat Genomics in China 2; Beijing (China); 1-5 Sep 2010
245 00 - TITLE STATEMENT
Title Gene sketch of Ae. tauschii, the D genome donor of common wheat
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. Beijing (China)
Name of publisher, distributor, etc. Chinese Academy of Agricultural Sciences :
Date of publication, distribution, etc. 2010
300 ## - PHYSICAL DESCRIPTION
Extent p. 24
500 ## - GENERAL NOTE
General note Abstract only
520 ## - SUMMARY, ETC.
Summary, etc. Wheat is one of the most important food crops as well as the model plant with complex genome.Here we present the gene centric genome of Aegilops tauschii, the D genome donor of common wheat using next-generation Illumina GA sequencing technology. We obtained more than 60x genome coverage, with the library insert size ranging from 170bp to 20kb. The short reads were assembled using SOAPdenovo, a successful genome assembler developed specifically for next-generation sequencing reads. The assembly contigs and scaffolds with an N50 length of 1.3kb and 35.6kb, reach about 1.34G and 2.66G, respectively, and the remaining gaps consist of intractable repeats as it appears. To evaluate the assembling result, we mapped 6 BACs independently to the draft genome, and each BAC could be covered with continuous scaffolds without obvious assembly errors. Besides, we sequenced 8 different tissues to achieve a highly reliable transcriptome to supplement the limits of draft genome assembly. Each tissue contributes more than 8Gb data in average to their independent assembly, which was clustered together with TGICL. We depicted 49689 protein-coding loci in our transcriptome, after a careful evaluation using a combination of full-length complementary DNAs and expressed sequence tags. More than 90% of all the ESTs could be well aligned to our contigs with coverage of over 50%. We also evaluated our transcriptome with BACs carried annotated genes. The case study for some important genes, mainly transcription factor, will be reported.
536 ## - FUNDING INFORMATION NOTE
Text of note Global Wheat Program
546 ## - LANGUAGE NOTE
Language note English
594 ## - STAFFID
StaffID INT2411
595 ## - COLLECTION
Collection CIMMYT Staff Publications Collection
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Chu Zhang,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Chuan Gao,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Dawen Xu,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Dong Li,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Guangyao Zhao,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Huanming Yang,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Jian Wang,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Jun Wang,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Junyi Wang,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Lifeng Gao,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Linfeng Yang,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Long Mao,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Peixiang Ni,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Qiaosheng Zhuang,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Ruilian Jing,
Relator term coaut.
9 (RLIN) 2023
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Shancen Zhao,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Xianchun Xia,
Relator term coaut.
9 (RLIN) 377
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Xiuying Kong,
Relator term coaut.
9 (RLIN) 2078
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Xu Liu,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Xueyong Zhang,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Yingrui Li,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Yong Tao,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Youzhi Ma,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Yucheng Dong,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name He Zhonghu
Miscellaneous information Global Wheat Program
Field link and sequence number INT2411
9 (RLIN) 838
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Conference proceedings
Holdings
Date last seen Total Checkouts Full call number Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
07/19/2017   CIS-6269 07/19/2017 Conference proceedings Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 07/19/2017

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