Knowledge Center Catalog

GS4PB : (Record no. 69754)

MARC details
000 -LEADER
fixed length control field 03229nab|a22004217a|4500
001 - CONTROL NUMBER
control field 69754
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20260108111214.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 202512s2025||||xxu|||p|op||||00||0|eng|d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1940-3372
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1940-3372 (Online)
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1002/tpg2.70150
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Ramasubramanian, V.
9 (RLIN) 37528
245 10 - TITLE STATEMENT
Title GS4PB :
Remainder of title An R Shiny application to facilitate a genomic selection pipeline for plant breeding
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. United States of America :
Name of publisher, distributor, etc. Wiley,
Date of publication, distribution, etc. 2025.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Open Access
520 ## - SUMMARY, ETC.
Summary, etc. The implementation of genomics-assisted breeding methodologies is helping to drive the genetic gain required to meet the grand challenge of producing more food using fewer resources in the face of a changing climate. Despite the documented usefulness of genomics-assisted breeding toward this end, its full infusion into most small- and medium-sized breeding programs is still incomplete. One major reason for limited routine application of genomic selection among most such programs is the lack of a single integrated software tool capable of assisting breeders throughout the entire genomic prediction pipeline. To help address this need, we have implemented a streamlined genomic prediction and selection pipeline designed for plant breeding programs using open-source tools. The steps implemented in the pipeline include processing genotypic data (e.g., filtering and imputing genotypic data), merging genotypic and phenotypic data, collecting enviromics covariates, estimating environmental kinship, optimizing training sets, cross-validating genomic prediction models, and implementing genomic prediction for single or multiple traits across single or multiple environments. Herein, we describe an R Shiny web application named "GS4PB" (Genomic Selection For Plant Breeding) that implements the above steps in the pipeline and discuss the rationale for each of the tools in the pipeline. We used this GS4PB application to conduct an experiment comparing phenotypic and genomic selection, and showed genomic selection worked as well as phenotypic selection for advancement of breeding lines. This publicly available analysis tool will help to lower entry barriers into advanced techniques of genomic prediction, enabling breeders to take advantage of these technologies to help drive genetic gain.
546 ## - LANGUAGE NOTE
Language note Text in English
597 ## - CGIAR Initiative
Donor or Funder North Central Soybean Research Program
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genomic selection
Source of heading or term AGROVOC
9 (RLIN) 1513
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Plant breeding
Source of heading or term AGROVOC
9 (RLIN) 1203
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Pipes
Source of heading or term AGROVOC
9 (RLIN) 1868
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Forecasting
Source of heading or term AGROVOC
9 (RLIN) 2701
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genetic gain
Source of heading or term AGROVOC
9 (RLIN) 2091
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Wartha, C.A.
9 (RLIN) 41032
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Singh, L.
9 (RLIN) 41033
700 1# - ADDED ENTRY--PERSONAL NAME
Field link and sequence number 001713327
Personal name Vitale, P.
Miscellaneous information Genetic Resources Program
9 (RLIN) 31497
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Sushan Ru
9 (RLIN) 41034
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Bhusal, S.J.
9 (RLIN) 41035
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Lorenz, A.J.
9 (RLIN) 11721
773 0# - HOST ITEM ENTRY
Title Plant Genome
Related parts v. 18, no. 4, e70150
Place, publisher, and date of publication United States of America : Wiley, 2025.
Record control number G94757
International Standard Serial Number 1940-3372
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Open Access through DSpace
Uniform Resource Identifier https://hdl.handle.net/10883/36658
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Suppress in OPAC No
Source of classification or shelving scheme Dewey Decimal Classification
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
01/07/2026   01/07/2026 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 01/07/2026

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