De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome (Record no. 69719)
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| fixed length control field | 07298nab|a22018137a|4500 |
| 001 - CONTROL NUMBER | |
| control field | 69719 |
| 003 - CONTROL NUMBER IDENTIFIER | |
| control field | MX-TxCIM |
| 005 - DATE AND TIME OF LATEST TRANSACTION | |
| control field | 20260108100602.0 |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION | |
| fixed length control field | 251215s2025 xxk||||| |||| 00| 0 eng d |
| 022 ## - INTERNATIONAL STANDARD SERIAL NUMBER | |
| International Standard Serial Number | 2041-1723 (Online) |
| 024 8# - OTHER STANDARD IDENTIFIER | |
| Standard number or code | https://doi.org/10.1038/s41467-025-64046-1 |
| 040 ## - CATALOGING SOURCE | |
| Original cataloging agency | MX-TxCIM |
| 041 ## - LANGUAGE CODE | |
| Language code of text/sound track or separate title | eng |
| 100 1# - MAIN ENTRY--PERSONAL NAME | |
| Personal name | White, B. |
| 9 (RLIN) | 40955 |
| 245 10 - TITLE STATEMENT | |
| Title | De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome |
| 260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT) | |
| Place of publication, distribution, etc. | United Kingdom : |
| Name of publisher, distributor, etc. | Nature Publishing Group, |
| Date of publication, distribution, etc. | 2025. |
| 500 ## - GENERAL NOTE | |
| General note | Peer review |
| 500 ## - GENERAL NOTE | |
| General note | Open Access |
| 520 ## - SUMMARY, ETC. | |
| Summary, etc. | Wheat is the most widely cultivated crop in the world, with over 215 million hectares grown annually. The 10+ Wheat Genomes Project recently sequenced and assembled to chromosome-level the genomes of nine wheat cultivars, uncovering genetic diversity and selection within the pan-genome of wheat. Here, we provide a wheat pan-transcriptome with de novo annotation and differential expression analysis for these wheat cultivars across multiple tissues. Using the de novo annotations we identify cultivar-specific genes and define the core and dispensable genomes. Expression analysis across cultivars and tissues reveals conservation in expression between a large core set of homeologous genes, in addition to widespread changes in subgenome homeolog expression bias between cultivars and cultivar-specific expression profiles. We utilise both the newly constructed gene-based wheat pan-genome and pan-transcriptome, demonstrating variation in the prolamin superfamily and immune-reactive proteins across cultivars. |
| 546 ## - LANGUAGE NOTE | |
| Language note | Text in English |
| 591 ## - CATALOGING NOTES | |
| Affiliation | Gardner, K.A. : No CIMMYT Affiliation |
| 591 ## - CATALOGING NOTES | |
| Affiliation | Fradgley, N. S. : No CIMMYT Affiliation |
| 597 ## - CGIAR Initiative | |
| Program & Accelerators | Breeding for Tomorrow |
| Donor or Funder | Biotechnology and Biological Sciences Research Council (BBSRC) |
| -- | Earlham Institute |
| -- | Norwich Research Park |
| -- | Australian Research Council (ARC) |
| -- | Coeliac Australia |
| -- | Swiss National Science Foundation (SNSF) |
| -- | Japan Science and Technology Agency (JST) |
| -- | University of Zurich |
| -- | Federal Ministry of Education and Research (BMBF) |
| CGSpace handle | https://hdl.handle.net/10568/179274 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Wheat |
| Source of heading or term | AGROVOC |
| 9 (RLIN) | 1310 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Gene Expression |
| Source of heading or term | AGROVOC |
| 9 (RLIN) | 8835 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Plant breeding |
| Source of heading or term | AGROVOC |
| 9 (RLIN) | 1203 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Transcriptomics |
| Source of heading or term | AGROVOC |
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| Title | Nature Communications |
| Related parts | v. 16, art. 8538 |
| Place, publisher, and date of publication | London (United Kingdom) : Nature Publishing Group, 2025. |
| International Standard Serial Number | 2041-1723 |
| Record control number | 57824 |
| 856 4# - ELECTRONIC LOCATION AND ACCESS | |
| Link text | Open Access through DSpace |
| Uniform Resource Identifier | https://hdl.handle.net/10883/36432 |
| 942 ## - ADDED ENTRY ELEMENTS (KOHA) | |
| Koha item type | Article |
| Suppress in OPAC | No |
| Source of classification or shelving scheme | Dewey Decimal Classification |
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|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12/15/2025 | 12/15/2025 | Article | Not Lost | Dewey Decimal Classification | CIMMYT Staff Publications Collection | CIMMYT Knowledge Center: John Woolston Library | CIMMYT Knowledge Center: John Woolston Library | 12/15/2025 |