InDels in an intronic region of gene Ccsmd04 coding for dormancy/auxin-associated protein control sterility mosaic disease resistance in pigeonpea (Record no. 69650)
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| 000 -LEADER | |
|---|---|
| fixed length control field | 03550nab a22005177a 4500 |
| 001 - CONTROL NUMBER | |
| control field | 69650 |
| 003 - CONTROL NUMBER IDENTIFIER | |
| control field | MX-TxCIM |
| 005 - DATE AND TIME OF LATEST TRANSACTION | |
| control field | 20260105133050.0 |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION | |
| fixed length control field | 251130s2025 ne |||p|op||| 00| 0 eng d |
| 022 ## - INTERNATIONAL STANDARD SERIAL NUMBER | |
| International Standard Serial Number | 0141-8130 |
| 022 ## - INTERNATIONAL STANDARD SERIAL NUMBER | |
| International Standard Serial Number | 1879-0003 (Online) |
| 024 8# - OTHER STANDARD IDENTIFIER | |
| Standard number or code | https://doi.org/10.1016/j.ijbiomac.2025.145777 |
| 040 ## - CATALOGING SOURCE | |
| Original cataloging agency | MX-TxCIM |
| 041 ## - LANGUAGE CODE | |
| Language code of text/sound track or separate title | eng |
| 100 0# - MAIN ENTRY--PERSONAL NAME | |
| Personal name | Sagar Krushnaji Rangari |
| 9 (RLIN) | 40759 |
| 245 10 - TITLE STATEMENT | |
| Title | InDels in an intronic region of gene Ccsmd04 coding for dormancy/auxin-associated protein control sterility mosaic disease resistance in pigeonpea |
| 260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT) | |
| Place of publication, distribution, etc. | Amsterdam (Netherlands) : |
| Name of publisher, distributor, etc. | Elsevier, |
| Date of publication, distribution, etc. | 2025. |
| 500 ## - GENERAL NOTE | |
| General note | Peer review |
| 500 ## - GENERAL NOTE | |
| General note | Open Access |
| 520 ## - SUMMARY, ETC. | |
| Summary, etc. | Sterility mosaic disease (SMD) presents a significant challenge to pigeonpea cultivation in the Indian subcontinent, potentially leading to total crop failure. The development of diagnostic molecular markers for SMD resistance can aid in developing SMD-resistant varieties. In this context, a QTL-seq approach identified genomic regions associated with SMD resistance using a recombinant inbred line population generated from ICP8863 × ICPL87119. In total, 6105 high-confidence variants were identified in the genomic region, smdCc04 based on the ΔSNP index. A genomic region smdCc04 on chromosome Cc04 spans 3.2 Mb (9.3–12.5 Mb) comprises 5 missense variants and 9 Indels. A total of 211 candidate genes were identified from this region. 1 bp insertion, 21 bp insertion, 9 bp deletion, and 3 bp insertion at different intronic positions in 22 susceptible genotypes leads to downregulation of Dormancy/auxin associated protein (Ccsmd04 gene) resulting in loss of signaling in disease resistance pathways. The identified sites recognize four important disease and plant growth related transcription factors. A total of 4 InDels and 8 SNPs were validated from smdCc04 genomic region using whole genome re-sequencing data and kompititive allele specific polymerase chain reaction (KASP) genotyping in resistant and susceptible pigeonpea genotypes. Gene-based markers snpCC00149 and snpCC00150 present in the genomic region smdCc04 can be used in pigeonpea breeding programs for developing SMD resistant varieties. |
| 546 ## - LANGUAGE NOTE | |
| Language note | Text in English |
| 591 ## - CATALOGING NOTES | |
| Affiliation | Gangurde, S.S. : No CIMMYT Affiliation |
| 597 ## - CGIAR Initiative | |
| CGIAR Impact area | Climate adaptation & mitigation |
| -- | Environmental health & biodiversity |
| CGIAR Initiative | Accelerated Breeding |
| -- | Breeding Resources |
| -- | Climate Resilience |
| CGIAR Action areas | Genetic Innovation |
| Donor or Funder | Bill & Melinda Gates Foundation (BMGF) |
| CGSpace handle | https://hdl.handle.net/10568/179403 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Pigeon peas |
| Source of heading or term | AGROVOC |
| 9 (RLIN) | 12886 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Quantitative Trait Loci |
| Source of heading or term | AGROVOC |
| 9 (RLIN) | 1853 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Genotyping |
| Source of heading or term | AGROVOC |
| 9 (RLIN) | 22057 |
| 700 0# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Namita Dube |
| 9 (RLIN) | 40758 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Sharma, V. |
| 9 (RLIN) | 40675 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Gangurde, S.S. |
| Field link and sequence number | 001715786 |
| Miscellaneous information | Global Maize Program |
| 9 (RLIN) | 11593 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Sharma, M. |
| 9 (RLIN) | 20716 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Gangashetty, P.I. |
| 9 (RLIN) | 37252 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Saxena, R.K. |
| 9 (RLIN) | 32040 |
| 700 0# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Abhinav Moghiya |
| 9 (RLIN) | 40754 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Sharma, V.K. |
| 9 (RLIN) | 15848 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Bhutia, K.L. |
| 9 (RLIN) | 40781 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Kant, R. |
| 9 (RLIN) | 40782 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Thudi, M. |
| 9 (RLIN) | 10316 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Satheesh Naik, S.J. |
| 9 (RLIN) | 40783 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Pratap, A. |
| 9 (RLIN) | 1382 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Dixit, G.P. |
| 9 (RLIN) | 10327 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Mayes, S. |
| 9 (RLIN) | 33562 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Pandey, M.K. |
| 9 (RLIN) | 11596 |
| 773 0# - HOST ITEM ENTRY | |
| Place, publisher, and date of publication | Amsterdam (Netherlands) : Elsevier, 2025. |
| Related parts | v. 321, pt. 3, art. 145777 |
| Title | International Journal of Biological Macromolecules |
| International Standard Serial Number | 0141-8130 |
| 856 4# - ELECTRONIC LOCATION AND ACCESS | |
| Link text | Click here to access online |
| Uniform Resource Identifier | https://doi.org/10.1016/j.ijbiomac.2025.145777 |
| 942 ## - ADDED ENTRY ELEMENTS (KOHA) | |
| Source of classification or shelving scheme | Dewey Decimal Classification |
| Koha item type | Article |
| Suppress in OPAC | No |
| Date last seen | Total Checkouts | Price effective from | Koha item type | Lost status | Source of classification or shelving scheme | Damaged status | Not for loan | Collection code | Withdrawn status | Home library | Current library | Date acquired |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11/30/2025 | 11/30/2025 | Article | Not Lost | Dewey Decimal Classification | Reprints Collection | CIMMYT Knowledge Center: John Woolston Library | CIMMYT Knowledge Center: John Woolston Library | 11/30/2025 |