Knowledge Center Catalog

GBLUP outperforms quantile mapping and outlier detection for enhanced genomic prediction (Record no. 68771)

MARC details
000 -LEADER
fixed length control field 02828nab|a22004697a|4500
001 - CONTROL NUMBER
control field 68771
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20251217110912.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 20254s2025|||||sz ||p|op||||00||0|eng|dd
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1422-0067 (Online)
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.3390/ijms26083620
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Montesinos-Lopez, O.A.
Miscellaneous information Genetic Resources Program
Field link and sequence number I1706800
9 (RLIN) 2700
245 10 - TITLE STATEMENT
Title GBLUP outperforms quantile mapping and outlier detection for enhanced genomic prediction
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. Switzerland :
Name of publisher, distributor, etc. MDPI,
Date of publication, distribution, etc. 2025.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Open Access
520 ## - SUMMARY, ETC.
Summary, etc. Genomic selection (GS) accelerates plant breeding by predicting complex traits using genomic data. This study compares genomic best linear unbiased prediction (GBLUP), quantile mapping (QM)-an adjustment to GBLUP predictions-and four outlier detection methods. Using 14 real datasets, predictive accuracy was evaluated with Pearson's correlation (COR) and normalized root mean square error (NRMSE). GBLUP consistently outperformed all other methods, achieving an average COR of 0.65 and an NRMSE reduction of up to 10% compared to alternative approaches. The proportion of detected outliers was low (<7%), and their removal had minimal impact on GBLUP's predictive performance. QM provided slight improvements in datasets with skewed distributions but showed no significant advantage in well-distributed data. These findings confirm GBLUP's robustness and reliability, suggesting limited utility for QM when data deviations are minimal.
546 ## - LANGUAGE NOTE
Language note Text in English
591 ## - CATALOGING NOTES
Affiliation Montesinos-Lopez, O.A. : No CIMMYT Affiliation
597 ## - CGIAR Initiative
Donor or Funder SLU Grogrund
Program & Accelerators Breeding for Tomorrow
CGSpace handle https://hdl.handle.net/10568/175487
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Marker-assisted selection
Source of heading or term AGROVOC
9 (RLIN) 10737
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Plant breeding
Source of heading or term AGROVOC
9 (RLIN) 1203
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Forecasting
Source of heading or term AGROVOC
9 (RLIN) 2701
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Wheat
Source of heading or term AGROVOC
9 (RLIN) 1310
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Crossa, J.
Miscellaneous information Genetic Resources Program
Field link and sequence number CCJL01
9 (RLIN) 59
700 1# - ADDED ENTRY--PERSONAL NAME
Field link and sequence number 001713327
Personal name Vitale, P.
Miscellaneous information Global Wheat Program
-- Genetic Resources Program
9 (RLIN) 31497
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Gerard, G.S.
Field link and sequence number 1713398
Miscellaneous information Global Wheat Program
9 (RLIN) 11490
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Crespo-Herrera, L.A.
Miscellaneous information Global Wheat Program
Field link and sequence number I1706538
9 (RLIN) 2608
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Dreisigacker, S.
Miscellaneous information Global Wheat Program
Field link and sequence number INT2692
9 (RLIN) 851
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Saint Pierre, C.
Miscellaneous information Global Wheat Program
Field link and sequence number INT2731
9 (RLIN) 855
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Posadas, L.G.
9 (RLIN) 38790
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Agbona, A.
9 (RLIN) 16134
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Buenrostro-Mariscal, R.
9 (RLIN) 22062
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Montesinos-Lopez, A.
9 (RLIN) 2702
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Chawade, A.
9 (RLIN) 7735
773 0# - HOST ITEM ENTRY
Title International Journal of Molecular Sciences
Related parts v. 26, no. 8, art. 3620
Place, publisher, and date of publication Switzerland : MDPI, 2025.
International Standard Serial Number 1661-6596
Record control number 57216
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Open Access through DSpace
Uniform Resource Identifier https://hdl.handle.net/10883/35640
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Suppress in OPAC No
Source of classification or shelving scheme Dewey Decimal Classification
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
05/07/2025   05/07/2025 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 05/07/2025

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