Knowledge Center Catalog

Effectiveness of KASP-SNP markers in selecting for grain quality traits in rice (Record no. 68765)

MARC details
000 -LEADER
fixed length control field 02912nab|a22004337a|4500
001 - CONTROL NUMBER
control field 68765
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20250721180641.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 20259s2025||||mx |||p|op||||00||0|eng|d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 2352-4073
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1016/j.plgene.2025.100503
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Asante, M. D.
Field link and sequence number 001712612
Miscellaneous information Formerly EIB
9 (RLIN) 6874
245 10 - TITLE STATEMENT
Title Effectiveness of KASP-SNP markers in selecting for grain quality traits in rice
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. Amsterdam (Netherlands) :
Name of publisher, distributor, etc. Elsevier B.V.,
Date of publication, distribution, etc. 2025.
500 ## - GENERAL NOTE
General note Peer review
520 ## - SUMMARY, ETC.
Summary, etc. Grain quality is a crucial factor for rice consumers, and as such, it is a major focus for breeders. Phenotyping for grain quality traits can be a laborious and costly process. In this study, we evaluated the effectiveness of KASP-SNP markers in selecting for grain quality traits, including aroma, gelatinization temperature, grain length, grain width, and grain length: width ratio. We phenotyped 300 diverse rice genotypes for these four traits and genotyped them using their respective KASP-SNP markers. A regression analysis of the phenotype on the genotype was performed. The markers associated with the fgr-1 and GS3 genes explained 97 % and 94 % of the phenotypic variation for aroma and grain length, respectively. Two SNP markers (snpOS00440 and snpOS00441) associated with the GW5/SW5 gene each explained 82 % of the phenotypic variation for grain width, which increased marginally to 85 % when combined. However, two markers, snpOS00036 and snpOS00450, for gelatinization temperature explained only 2 % and 25 % of the phenotypic variation, respectively, indicating that these markers were not efficient in predicting this trait. Our findings suggest that the markers associated with aroma (fgr-1), grain length (GS3), and grain width (GW5/SW5) are highly efficient and reliable for marker-assisted selection.
546 ## - LANGUAGE NOTE
Language note Text in English
597 ## - CGIAR Initiative
Donor or Funder International Fund for Agricultural Development (IFAD)
-- CGIAR Trust Fund
CGSpace handle https://hdl.handle.net/10568/174532
Program & Accelerators Breeding for Tomorrow
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genes
Source of heading or term AGROVOC
9 (RLIN) 3563
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Quantitative Trait Loci
Source of heading or term AGROVOC
9 (RLIN) 1853
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element SNP genotyping
Source of heading or term AGROVOC
9 (RLIN) 33946
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Rice
Source of heading or term AGROVOC
9 (RLIN) 1243
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Grain
Source of heading or term AGROVOC
9 (RLIN) 1138
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Quality
Source of heading or term AGROVOC
9 (RLIN) 1231
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Kirpal Agyemang Ofosu
9 (RLIN) 38755
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Frimpong, F.
9 (RLIN) 37990
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Deladem Kwami Alphonso
9 (RLIN) 38756
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Nartey, E.
9 (RLIN) 38757
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Agyei Elvis Obeng
9 (RLIN) 38758
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Bam, R.K.
9 (RLIN) 38759
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Gamenyah, D.D.
9 (RLIN) 38760
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Ribeiro, P.F.
9 (RLIN) 6872
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name William, H.M.
Field link and sequence number I1706703
Miscellaneous information Excellence in Breeding
-- Breeding Modernization and Innovation Platform
9 (RLIN) 19524
773 0# - HOST ITEM ENTRY
Title Plant Gene
Related parts v. 43, art. 100503
Place, publisher, and date of publication Amsteram (Netherlands) : Elsevier B.V., 2025.
International Standard Serial Number 2352-4073
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Suppress in OPAC No
Source of classification or shelving scheme Dewey Decimal Classification
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
05/03/2025   05/03/2025 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 05/03/2025

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