MARC details
| 000 -LEADER |
|---|
| fixed length control field |
03868nab|a22004817a|4500 |
| 001 - CONTROL NUMBER |
|---|
| control field |
66317 |
| 003 - CONTROL NUMBER IDENTIFIER |
|---|
| control field |
MX-TxCIM |
| 005 - DATE AND TIME OF LATEST TRANSACTION |
|---|
| control field |
20240919021234.0 |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION |
|---|
| fixed length control field |
20234s2023||||mx |||p|op||||00||0|eng|d |
| 022 ## - INTERNATIONAL STANDARD SERIAL NUMBER |
|---|
| International Standard Serial Number |
2073-4425 |
| 024 8# - OTHER STANDARD IDENTIFIER |
|---|
| Standard number or code |
https://doi.org/10.3390/genes14040927 |
| 040 ## - CATALOGING SOURCE |
|---|
| Original cataloging agency |
MX-TxCIM |
| 041 ## - LANGUAGE CODE |
|---|
| Language code of text/sound track or separate title |
eng |
| 100 1# - MAIN ENTRY--PERSONAL NAME |
|---|
| Personal name |
Montesinos-Lopez, O.A. |
| Field link and sequence number |
I1706800 |
| 9 (RLIN) |
2700 |
| Miscellaneous information |
Genetic Resources Program |
| 245 10 - TITLE STATEMENT |
|---|
| Title |
Optimizing sparse testing for genomic prediction of plant breeding crops |
| 260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT) |
|---|
| Name of publisher, distributor, etc. |
MDPI, |
| Date of publication, distribution, etc. |
2023. |
| Place of publication, distribution, etc. |
Basel (Switzerland) : |
| 500 ## - GENERAL NOTE |
|---|
| General note |
Peer review |
| 500 ## - GENERAL NOTE |
|---|
| General note |
Open Access |
| 520 ## - SUMMARY, ETC. |
|---|
| Summary, etc. |
While sparse testing methods have been proposed by researchers to improve the efficiency of genomic selection (GS) in breeding programs, there are several factors that can hinder this. In this research, we evaluated four methods (M1–M4) for sparse testing allocation of lines to environments under multi-environmental trails for genomic prediction of unobserved lines. The sparse testing methods described in this study are applied in a two-stage analysis to build the genomic training and testing sets in a strategy that allows each location or environment to evaluate only a subset of all genotypes rather than all of them. To ensure a valid implementation, the sparse testing methods presented here require BLUEs (or BLUPs) of the lines to be computed at the first stage using an appropriate experimental design and statistical analyses in each location (or environment). The evaluation of the four cultivar allocation methods to environments of the second stage was done with four data sets (two large and two small) under a multi-trait and uni-trait framework. We found that the multi-trait model produced better genomic prediction (GP) accuracy than the uni-trait model and that methods M3 and M4 were slightly better than methods M1 and M2 for the allocation of lines to environments. Some of the most important findings, however, were that even under a scenario where we used a training-testing relation of 15–85%, the prediction accuracy of the four methods barely decreased. This indicates that genomic sparse testing methods for data sets under these scenarios can save considerable operational and financial resources with only a small loss in precision, which can be shown in our cost-benefit analysis. |
| 546 ## - LANGUAGE NOTE |
|---|
| Language note |
Text in English |
| 591 ## - CATALOGING NOTES |
|---|
| Affiliation |
Montesinos-Lopez, O.A. : No CIMMYT Affiliation |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Maize |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
1173 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Testing |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
12144 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Wheat |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
1310 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Plant breeding |
| Miscellaneous information |
AGROVOC |
| Source of heading or term |
|
| 9 (RLIN) |
1203 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Crops |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
1069 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Saint Pierre, C. |
| Field link and sequence number |
INT2731 |
| 9 (RLIN) |
855 |
| Miscellaneous information |
Global Wheat Program |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Gezan, S.A. |
| 9 (RLIN) |
31067 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Bentley, A.R. |
| Field link and sequence number |
001712492 |
| Miscellaneous information |
Formerly Global Wheat Program |
| 9 (RLIN) |
9599 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Mosqueda-Gonzalez, B.A. |
| 9 (RLIN) |
19441 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Montesinos-Lopez, A. |
| 9 (RLIN) |
2702 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Eeuwijk, F.A. van |
| 9 (RLIN) |
9549 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Beyene, Y. |
| Field link and sequence number |
INT2891 |
| 9 (RLIN) |
870 |
| Miscellaneous information |
Global Maize Program |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Gowda, M. |
| Field link and sequence number |
I1705963 |
| 9 (RLIN) |
795 |
| Miscellaneous information |
Global Maize Program |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Gardner, K.A. |
| Field link and sequence number |
001712617 |
| Miscellaneous information |
Genetic Resources Program |
| 9 (RLIN) |
17393 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Gerard, G.S. |
| Field link and sequence number |
1713398 |
| 9 (RLIN) |
11490 |
| Miscellaneous information |
Global Wheat Program |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Crespo-Herrera, L.A. |
| Field link and sequence number |
I1706538 |
| 9 (RLIN) |
2608 |
| Miscellaneous information |
Global Wheat Program |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Crossa, J. |
| Miscellaneous information |
Genetic Resources Program |
| Field link and sequence number |
CCJL01 |
| 9 (RLIN) |
59 |
| 773 0# - HOST ITEM ENTRY |
|---|
| Title |
Genes |
| Related parts |
v. 14, no. 4, art. 927 |
| Place, publisher, and date of publication |
Basel (Switzerland) : MDPI, 2023 |
| International Standard Serial Number |
2073-4425 |
| 856 4# - ELECTRONIC LOCATION AND ACCESS |
|---|
| Link text |
Open Access through DSpace |
| Uniform Resource Identifier |
https://hdl.handle.net/10883/22625 |
| 942 ## - ADDED ENTRY ELEMENTS (KOHA) |
|---|
| Koha item type |
Article |
| Suppress in OPAC |
No |
| Source of classification or shelving scheme |
Dewey Decimal Classification |