Knowledge Center Catalog

Identification of iron and zinc responsive genes in pearl millet using genome-wide RNA-sequencing approach (Record no. 65766)

MARC details
000 -LEADER
fixed length control field 03314nab|a22004577a|4500
001 - CONTROL NUMBER
control field 65766
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20230216183341.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 202211s2022||||mx |||p|op||||00||0|eng|d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 2296-861X (Online)
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.3389/fnut.2022.884381
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Goud, C.A.
9 (RLIN) 29382
245 10 - TITLE STATEMENT
Title Identification of iron and zinc responsive genes in pearl millet using genome-wide RNA-sequencing approach
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Name of publisher, distributor, etc. Frontiers Media,
Date of publication, distribution, etc. 2022.
Place of publication, distribution, etc. Switzerland :
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Open Access
520 ## - SUMMARY, ETC.
Summary, etc. Pearl millet (Pennisetum glaucum L.), an important source of iron (Fe) and zinc (Zn) for millions of families in dryland tropics, helps in eradicating micronutrient malnutrition. The crop is rich in Fe and Zn, therefore, identification of the key genes operating the mineral pathways is an important step to accelerate the development of biofortified cultivars. In a first-of-its-kind experiment, leaf and root samples of a pearl millet inbred ICMB 1505 were exposed to combinations of Fe and Zn stress conditions using the hydroponics method, and a whole-genome transcriptome assay was carried out to characterize the differentially expressed genes (DEGs) and pathways. A total of 37,093 DEGs under different combinations of stress conditions were identified, of which, 7,023 and 9,996 DEGs were reported in the leaf and root stress treatments, respectively. Among the 10,194 unique DEGs, 8,605 were annotated to cellular, biological, and molecular functions and 458 DEGs were assigned to 39 pathways. The results revealed the expression of major genes related to the mugineic acid pathway, phytohormones, chlorophyll biosynthesis, photosynthesis, and carbohydrate metabolism during Fe and Zn stress. The cross-talks between the Fe and Zn provided information on their dual and opposite regulation of key uptake and transporter genes under Fe and Zn deficiency. SNP haplotypes in rice, maize, sorghum, and foxtail millet as well as in Arabidopsis using pearl millet Fe and Zn responsive genes could be used for designing the markers in staple crops. Our results will assist in developing Fe and Zn-efficient pearl millet varieties in biofortification breeding programs and precision delivery mechanisms to ameliorate malnutrition in South Asia and Sub-Saharan Africa.
546 ## - LANGUAGE NOTE
Language note Text in English
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Biofortification
Source of heading or term AGROVOC
9 (RLIN) 1731
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genes
Source of heading or term AGROVOC
9 (RLIN) 3563
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Iron
Source of heading or term AGROVOC
9 (RLIN) 3544
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Malnutrition
Source of heading or term AGROVOC
9 (RLIN) 6463
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Transcriptome
Source of heading or term AGROVOC
9 (RLIN) 20139
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Zinc
Source of heading or term AGROVOC
9 (RLIN) 1315
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Pearl millet
Source of heading or term AGROVOC
9 (RLIN) 13920
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element RNA
Source of heading or term AGROVOC
9 (RLIN) 5052
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Satturu, V.
9 (RLIN) 29383
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Malipatil, R.
9 (RLIN) 29384
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Viswanath, A.
9 (RLIN) 29385
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Semalaiyappan, J.
9 (RLIN) 29386
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Kudapa, H.
9 (RLIN) 17704
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Rathod, S.
9 (RLIN) 29387
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Rathore, A.
Field link and sequence number 001712937
Miscellaneous information Excellence in Breeding
9 (RLIN) 7897
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Govindaraj, M.
9 (RLIN) 3436
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Thirunavukkarasu, N.
9 (RLIN) 1456
773 0# - HOST ITEM ENTRY
Title Frontiers in Nutrition
Related parts v. 9, art. 884381
Place, publisher, and date of publication Switzerland : Frontiers, 2022
International Standard Serial Number 2296-861X
856 ## - ELECTRONIC LOCATION AND ACCESS
Link text Open Access through DSpace
Uniform Resource Identifier https://hdl.handle.net/10883/22268
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Suppress in OPAC No
Source of classification or shelving scheme Dewey Decimal Classification
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
11/30/2022   11/30/2022 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 11/30/2022

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