Knowledge Center Catalog

Gene Ontology Meta Annotator for Plants (GOMAP) (Record no. 63951)

MARC details
000 -LEADER
fixed length control field 02304nab a22003137a 4500
001 - CONTROL NUMBER
control field 63951
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20211006074802.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 200320s2021 xxk|||p|op||| 00| 0 eng d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1746-4811
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1186/s13007-021-00754-1
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 1# - MAIN ENTRY--PERSONAL NAME
9 (RLIN) 21298
Personal name Wimalanathan, K.
245 10 - TITLE STATEMENT
Title Gene Ontology Meta Annotator for Plants (GOMAP)
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. London (United Kingdom) :
Name of publisher, distributor, etc. BioMed Central,
Date of publication, distribution, etc. 2021.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Open Access
520 ## - SUMMARY, ETC.
Summary, etc. Annotating gene structures and functions to genome assemblies is necessary to make assembly resources useful for biological inference. Gene Ontology (GO) term assignment is the most used functional annotation system, and new methods for GO assignment have improved the quality of GO-based function predictions. The Gene Ontology Meta Annotator for Plants (GOMAP) is an optimized, high-throughput, and reproducible pipeline for genome-scale GO annotation of plants. We containerized GOMAP to increase portability and reproducibility and also optimized its performance for HPC environments. Here we report on the pipeline’s availability and performance for annotating large, repetitive plant genomes and describe how GOMAP was used to annotate multiple maize genomes as a test case. Assessment shows that GOMAP expands and improves the number of genes annotated and annotations assigned per gene as well as the quality (based on Fmax) of GO assignments in maize. GOMAP has been deployed to annotate other species including wheat, rice, barley, cotton, and soy. Instructions and access to the GOMAP Singularity container are freely available online at https://bioinformapping.com/gomap/. A list of annotated genomes and links to data is maintained at https://dill-picl.org/projects/gomap/.
546 ## - LANGUAGE NOTE
Language note Text in English
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 3563
Topical term or geographic name as entry element Genes
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 8810
Topical term or geographic name as entry element Ontology
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genomes
Miscellaneous information AGROVOC
Source of heading or term
9 (RLIN) 1131
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 9025
Topical term or geographic name as entry element Plant Genetics
700 ## - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 10083
Personal name Lawrence-Dill, C.J.
773 0# - HOST ITEM ENTRY
Place, publisher, and date of publication London (United Kingdom) : BioMed Central, 2021.
Related parts v. 17, art. 54
Title Plant Methods
Record control number 57210
International Standard Serial Number 1746-4811
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Click here to access online
Uniform Resource Identifier https://doi.org/10.1186/s13007-021-00754-1
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Source of classification or shelving scheme Dewey Decimal Classification
Koha item type Article
Suppress in OPAC No
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
07/15/2021   07/15/2021 Article Not Lost Dewey Decimal Classification     Reprints Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 07/15/2021

International Maize and Wheat Improvement Center (CIMMYT) © Copyright 2021.
Carretera México-Veracruz. Km. 45, El Batán, Texcoco, México, C.P. 56237.
If you have any question, please contact us at
CIMMYT-Knowledge-Center@cgiar.org