Knowledge Center Catalog

Building the Embrapa rice breeding dataset for efficient data reuse (Record no. 63900)

MARC details
000 -LEADER
fixed length control field 03279nab|a22005297a|4500
001 - CONTROL NUMBER
control field 63900
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20240919021231.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 202101s2021||||xxu|||p|op||||00||0|eng|d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 0011-183X
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1435-0653 (Online)
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1002/csc2.20550
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Breseghello, F.
9 (RLIN) 20853
245 10 - TITLE STATEMENT
Title Building the Embrapa rice breeding dataset for efficient data reuse
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. Madison (USA) :
Name of publisher, distributor, etc. CSSA :
-- Wiley,
Date of publication, distribution, etc. 2021.
500 ## - GENERAL NOTE
General note Peer review
520 ## - SUMMARY, ETC.
Summary, etc. Embrapa has led breeding programs for irrigated and upland rice (Oryza sativa L.) since 1977, generating a large amount of pedigree and phenotypic data. However, there were no systematic standards for data recording nor long-term data preservation and reuse strategies. With the new aim of making data reuse practical, we recovered all data available and structured it into the Embrapa Rice Breeding Dataset (ERBD). In its current version, the ERBD includes 20,504 crosses involving 9,974 parents, the pedigrees of most of the 4,532 inbred lines that took part in advanced field trials, and phenotypic data from 2,711 field trials (1,118 irrigated, 1,593 upland trials), representing 226,458 field plots. Those trials were conducted over 38 years (1982–2019), in 247 locations, in latitudes ranging from 3°N to 33°S. Phenotypic traits included grain yield, days to flowering, plant height, canopy lodging, and five important fungal diseases: leaf blast, panicle blast, brown spot, leaf scald, and grain discoloration. The total number of data points surpasses 1.27 million. Descriptive statistics were computed over the dataset, split by cropping systems (irrigated or upland). The mean heritability of grain yield was high for both systems, at around.7, whereas the mean coefficient of variation was 13.9% for irrigated trials and 18.7% for upland trials. The ERBD offers the possibility of conducting studies on different aspects of rice breeding and genetics, including genetic gain, G×E analysis, genome-wide association studies and genomic prediction.
546 ## - LANGUAGE NOTE
Language note Text in English
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Rice
Source of heading or term AGROVOC
9 (RLIN) 1243
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Plant breeding
Miscellaneous information AGROVOC
Source of heading or term
9 (RLIN) 1203
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 9002
Topical term or geographic name as entry element Data
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Mello, R.N. de
9 (RLIN) 20854
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Pinheiro, P.V.
9 (RLIN) 20855
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Soares, D.M.
9 (RLIN) 20856
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Lopes Júnior, S.
9 (RLIN) 20857
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Nakano Rangel, P.H.
9 (RLIN) 20858
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Guimaraes, E.P.
9 (RLIN) 9740
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Castro, A.P. de
9 (RLIN) 20859
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Colombari Filho, J.M.
9 (RLIN) 20860
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Magalhães Júnior, A.M. de
9 (RLIN) 20861
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Fagundes, P.R.R.
9 (RLIN) 20862
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Neves, P.C.F.
9 (RLIN) 20863
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Furtini, I.V.
9 (RLIN) 20864
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Utumi, M.M.
9 (RLIN) 20865
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Pereira, J.A.
9 (RLIN) 20866
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Cordeiro, A.C.C.
9 (RLIN) 20867
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Filho, A.S.
9 (RLIN) 20868
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Abreu, G.B.
9 (RLIN) 20869
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Moura Neto, F.P. de
9 (RLIN) 20870
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Pietragalla, J.
Field link and sequence number CPIJ01
Miscellaneous information IBP
9 (RLIN) 1413
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Vargas-Hernández, M.
9 (RLIN) 2281
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Crossa, J.
Miscellaneous information Genetic Resources Program
Field link and sequence number CCJL01
9 (RLIN) 59
773 0# - HOST ITEM ENTRY
Title Crop Science
Place, publisher, and date of publication Madison (USA) : CSSA : Wiley, 2021.
International Standard Serial Number 0011-183X
Related parts v. 61, no. 5, p. 3445-3457
Record control number G444244
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Suppress in OPAC No
Source of classification or shelving scheme Dewey Decimal Classification
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
07/05/2021   07/05/2021 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 07/05/2021

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