MARC details
| 000 -LEADER |
|---|
| fixed length control field |
03095nab|a22003497a|4500 |
| 001 - CONTROL NUMBER |
|---|
| control field |
63678 |
| 003 - CONTROL NUMBER IDENTIFIER |
|---|
| control field |
MX-TxCIM |
| 005 - DATE AND TIME OF LATEST TRANSACTION |
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| control field |
20240919020952.0 |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION |
|---|
| fixed length control field |
202104s2021||||xxu|||p|op||||00||0|eng|d |
| 022 ## - INTERNATIONAL STANDARD SERIAL NUMBER |
|---|
| International Standard Serial Number |
2160-1836 |
| 024 8# - OTHER STANDARD IDENTIFIER |
|---|
| Standard number or code |
https://doi.org/10.1093/g3journal/jkab040 |
| 040 ## - CATALOGING SOURCE |
|---|
| Original cataloging agency |
MX-TxCIM |
| 041 ## - LANGUAGE CODE |
|---|
| Language code of text/sound track or separate title |
eng |
| 100 1# - MAIN ENTRY--PERSONAL NAME |
|---|
| 9 (RLIN) |
15939 |
| Personal name |
Costa-Neto, G. |
| Field link and sequence number |
001712813 |
| Miscellaneous information |
Genetic Resources Program |
| 245 10 - TITLE STATEMENT |
|---|
| Title |
EnvRtype : |
| Remainder of title |
a software to interplay enviromics and quantitative genomics in agriculture |
| 260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT) |
|---|
| Place of publication, distribution, etc. |
Bethesda, MD (USA) : |
| Name of publisher, distributor, etc. |
Genetics Society of America, |
| Date of publication, distribution, etc. |
2021. |
| 500 ## - GENERAL NOTE |
|---|
| General note |
Peer review |
| 500 ## - GENERAL NOTE |
|---|
| General note |
Open Access |
| 520 ## - SUMMARY, ETC. |
|---|
| Summary, etc. |
Envirotyping is an essential technique used to unfold the nongenetic drivers associated with the phenotypic adaptation of living organisms. Here, we introduce the EnvRtype R package, a novel toolkit developed to interplay large-scale envirotyping data (enviromics) into quantitative genomics. To start a user-friendly envirotyping pipeline, this package offers: (1) remote sensing tools for collecting (get_weather and extract_GIS functions) and processing ecophysiological variables (processWTH function) from raw environmental data at single locations or worldwide; (2) environmental characterization by typing environments and profiling descriptors of environmental quality (env_typing function), in addition to gathering environmental covariables as quantitative descriptors for predictive purposes (W_matrix function); and (3) identification of environmental similarity that can be used as an enviromic-based kernel (env_typing function) in whole-genome prediction (GP), aimed at increasing ecophysiological knowledge in genomic best-unbiased predictions (GBLUP) and emulating reaction norm effects (get_kernel and kernel_model functions). We highlight literature mining concepts in fine-tuning envirotyping parameters for each plant species and target growing environments. We show that envirotyping for predictive breeding collects raw data and processes it in an eco-physiologically smart way. Examples of its use for creating global-scale envirotyping networks and integrating reaction-norm modeling in GP are also outlined. We conclude that EnvRtype provides a cost-effective envirotyping pipeline capable of providing high quality enviromic data for a diverse set of genomic-based studies, especially for increasing accuracy in GP across untested growing environments. |
| 546 ## - LANGUAGE NOTE |
|---|
| Language note |
Text in English |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Genotype environment interaction |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
1133 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Agriculture |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
1007 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Genomics |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
1132 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Computer software |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
4868 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Galli, G. |
| 9 (RLIN) |
8650 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Fanelli Carvalho, H. |
| 9 (RLIN) |
19807 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Crossa, J. |
| Miscellaneous information |
Genetic Resources Program |
| Field link and sequence number |
CCJL01 |
| 9 (RLIN) |
59 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Fritsche-Neto, R. |
| 9 (RLIN) |
6507 |
| 773 0# - HOST ITEM ENTRY |
|---|
| Title |
G3: Genes, Genomes, Genetics |
| Related parts |
v. 11, no. 4, art. jkab040 |
| Place, publisher, and date of publication |
Bethesda, MD (USA) : Genetics Society of America, 2021. |
| Record control number |
56922 |
| International Standard Serial Number |
2160-1836 |
| 856 4# - ELECTRONIC LOCATION AND ACCESS |
|---|
| Link text |
Open Access through DSpace |
| Uniform Resource Identifier |
https://hdl.handle.net/10883/21501 |
| 942 ## - ADDED ENTRY ELEMENTS (KOHA) |
|---|
| Koha item type |
Article |
| Suppress in OPAC |
No |
| Source of classification or shelving scheme |
Dewey Decimal Classification |