Knowledge Center Catalog

Incorporating genome-wide association mapping results into genomic prediction models for grain yield and yield stability in CIMMYT spring bread wheat (Record no. 63067)

MARC details
000 -LEADER
fixed length control field 02836nab|a22003737a|4500
001 - CONTROL NUMBER
control field 63067
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20220413201809.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 200910s2020||||sz |||p|op||||00||0|eng|d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1664-462X (Online)
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.3389/fpls.2020.00197
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Sehgal, D.
9 (RLIN) 922
Miscellaneous information Global Wheat Program
Field link and sequence number INT3332
245 10 - TITLE STATEMENT
Title Incorporating genome-wide association mapping results into genomic prediction models for grain yield and yield stability in CIMMYT spring bread wheat
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. Switzerland :
Name of publisher, distributor, etc. Frontiers,
Date of publication, distribution, etc. 2020.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Open Access
520 ## - SUMMARY, ETC.
Summary, etc. Untangling the genetic architecture of grain yield (GY) and yield stability is an important determining factor to optimize genomics-assisted selection strategies in wheat. We conducted in-depth investigation on the above using a large set of advanced bread wheat lines (4,302), which were genotyped with genotyping-by-sequencing markers and phenotyped under contrasting (irrigated and stress) environments. Haplotypes-based genome-wide-association study (GWAS) identified 58 associations with GY and 15 with superiority index Pi (measure of stability). Sixteen associations with GY were “environment-specific” with two on chromosomes 3B and 6B with the large effects and 8 associations were consistent across environments and trials. For Pi, 8 associations were from chromosomes 4B and 7B, indicating ‘hot spot’ regions for stability. Epistatic interactions contributed to an additional 5–9% variation on average. We further explored whether integrating consistent and robust associations identified in GWAS as fixed effects in prediction models improves prediction accuracy. For GY, the model accounting for the haplotype-based GWAS loci as fixed effects led to up to 9–10% increase in prediction accuracy, whereas for Pi this approach did not provide any advantage. This is the first report of integrating genetic architecture of GY and yield stability into prediction models in wheat.
526 ## - STUDY PROGRAM INFORMATION NOTE
Program name Wheat CRP
Wheat Flagship Projects FP3 - Global partnership to accelerate genetic gain in farmers field
546 ## - LANGUAGE NOTE
Language note Text in English
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 1296
Topical term or geographic name as entry element Triticum aestivum
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genomes
Miscellaneous information AGROVOC
Source of heading or term
9 (RLIN) 1131
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 10737
Topical term or geographic name as entry element Marker-assisted selection
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 1132
Topical term or geographic name as entry element Genomics
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 4557
Personal name Rosyara, U.
Field link and sequence number I1707470
Miscellaneous information Global Wheat Program
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Mondal, S.
Miscellaneous information Formerly Global Wheat Program
Field link and sequence number INT3211
9 (RLIN) 904
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Singh, R.P.
Miscellaneous information Global Wheat Program
Field link and sequence number INT0610
9 (RLIN) 825
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 2092
Personal name Poland, J.A.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 851
Personal name Dreisigacker, S.
Field link and sequence number INT2692
Miscellaneous information Global Wheat Program
773 0# - HOST ITEM ENTRY
Title Frontiers in Plant Science
Related parts v. 11, art. 197
Place, publisher, and date of publication Switzerland : Frontiers, 2020.
International Standard Serial Number 1664-462X
Record control number u56875
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Open Access through DSpace
Uniform Resource Identifier https://hdl.handle.net/10883/21102
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Suppress in OPAC No
Source of classification or shelving scheme Dewey Decimal Classification
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
01/05/2021   01/05/2021 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 01/05/2021

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