Knowledge Center Catalog

Incorporation of parental phenotypic data into multi‐omic models improves prediction of yield‐related traits in hybrid rice (Record no. 62983)

MARC details
000 -LEADER
fixed length control field 03201nab|a22003977a|4500
001 - CONTROL NUMBER
control field 62983
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20230522171931.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 201118s2021||||xxk|||p|op||||00||0|eng|d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1467-7644
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1467-7652 (Online)
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1111/pbi.13458
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 0# - MAIN ENTRY--PERSONAL NAME
Personal name Yang Xu
9 (RLIN) 17252
245 10 - TITLE STATEMENT
Title Incorporation of parental phenotypic data into multi‐omic models improves prediction of yield‐related traits in hybrid rice
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. United Kingdom :
Name of publisher, distributor, etc. Wiley,
Date of publication, distribution, etc. 2021.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Open Access
520 ## - SUMMARY, ETC.
Summary, etc. Hybrid breeding has been shown to effectively increase rice productivity. However, identifying desirable hybrids out of numerous potential combinations is a daunting challenge. Genomic selection holds great promise for accelerating hybrid breeding by enabling early selection before phenotypes are measured. With the recent advances in multi‐omic technologies, hybrid prediction based on transcriptomic and metabolomic data has received increasing attention. However, the current omic‐based hybrid prediction has ignored parental phenotypic information, which is of fundamental importance in plant breeding. In this study, we integrated parental phenotypic information into various multi‐omic prediction models applied in hybrid breeding of rice and compared the predictabilities of 15 combinations from four sets of predictors from the parents, that is genome, transcriptome, metabolome and phenome. The predictability for each combination was evaluated using the best linear unbiased prediction and a modified fast HAT method. We found significant interactions between predictors and traits in predictability, but joint prediction with various combinations of the predictors significantly improved predictability relative to prediction of any single source omic data for each trait investigated. Incorporation of parental phenotypic data into various omic predictors increased the predictability, averagely by 13.6%, 54.5%, 19.9% and 8.3%, for grain yield, number of tillers per plant, number of grains per panicle and 1000 grain weight, respectively. Among nine models of incorporating parental traits, the AD‐All model was the most effective one. This novel strategy of incorporating parental phenotypic data into multi‐omic prediction is expected to improve hybrid breeding progress, especially with the development of high‐throughput phenotyping technologies.
546 ## - LANGUAGE NOTE
Language note Text in English
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Marker-assisted selection
Source of heading or term AGROVOC
9 (RLIN) 10737
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Rice
9 (RLIN) 1243
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Hybrids
Source of heading or term AGROVOC
9 (RLIN) 1151
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Yue Zhao
9 (RLIN) 17449
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Xin Wang
9 (RLIN) 6995
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Ying Ma
9 (RLIN) 17445
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Pengcheng Li
9 (RLIN) 17447
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Zefeng Yang
9 (RLIN) 17448
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Xuecai Zhang
Miscellaneous information Global Maize Program
Field link and sequence number INT3400
9 (RLIN) 951
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Chenwu Xu
9 (RLIN) 17254
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Shizhong Xu
9 (RLIN) 16865
773 0# - HOST ITEM ENTRY
Related parts v. 19, no. 2, p. 261-272
Place, publisher, and date of publication United Kingdom : Wiley, 2021.
Title Plant Biotechnology Journal
International Standard Serial Number 1467-7652
Record control number u57523
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Open Access through DSpace
Uniform Resource Identifier https://hdl.handle.net/10883/21060
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Suppress in OPAC No
Source of classification or shelving scheme Dewey Decimal Classification
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
12/08/2020   12/08/2020 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 12/08/2020

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