Knowledge Center Catalog

Identification and validation of reference genes for RT-qPCR normalization in wheat meiosis (Record no. 62729)

MARC details
000 -LEADER
fixed length control field 02757nab|a22003377a|4500
001 - CONTROL NUMBER
control field 62729
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20240919021229.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 200423s2020||||xxk|||p|op||||00||0|eng|d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 2045-2322
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1038/s41598-020-59580-5
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Garrido, J.
9 (RLIN) 16486
245 10 - TITLE STATEMENT
Title Identification and validation of reference genes for RT-qPCR normalization in wheat meiosis
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. London (United Kingdom) :
Name of publisher, distributor, etc. Nature Publishing Group,
Date of publication, distribution, etc. 2020.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Open Access
520 ## - SUMMARY, ETC.
Summary, etc. Meiosis is a specialized type of cell division occurring in sexually reproducing organisms to generate haploid cells known as gametes. In flowering plants, male gametes are produced in anthers, being encased in pollen grains. Understanding the genetic regulation of meiosis key events such as chromosome recognition and pairing, synapsis and recombination, is needed to manipulate chromosome associations for breeding purposes, particularly in important cereal crops like wheat. Reverse transcription-quantitative PCR (RT-qPCR) is widely used to analyse gene expression and to validate the results obtained by other transcriptomic analyses, like RNA-seq. Selection and validation of appropriate reference genes for RT-qPCR normalization is essential to obtain reproducible and accurate expression data. In this work, twelve candidate reference genes were evaluated using the mainstream algorithms geNorm, Normfinder, BestKeeper and ΔCt, then ranked from most to least suitable for normalization with RefFinder. Different sets of reference genes were recommended to normalize gene expression data in anther meiosis of bread and durum wheat, their corresponding genotypes in the absence of the Ph1 locus and for comparative studies among wheat genotypes. Comparisons between meiotic (anthers) and somatic (leaves and roots) wheat tissues were also carried out. To the best of our knowledge, our study provides the first comprehensive list of reference genes for robust RT-qPCR normalization to study differentially expressed genes during male meiosis in wheat in a breeding framework.
546 ## - LANGUAGE NOTE
Language note Text in English
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Wheat
Miscellaneous information AGROVOC
Source of heading or term
9 (RLIN) 1310
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 8835
Topical term or geographic name as entry element Gene Expression
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Plant breeding
Miscellaneous information AGROVOC
Source of heading or term
9 (RLIN) 1203
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 16487
Topical term or geographic name as entry element Reverse transcription
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 12563
Topical term or geographic name as entry element PCR
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Aguilar, M.
9 (RLIN) 16488
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Prieto, P.
9 (RLIN) 16489
773 0# - HOST ITEM ENTRY
Title Nature Scientific Reports
Related parts v. 10, art. 2726
Place, publisher, and date of publication London (United Kingdom) : Nature Publishing Group, 2020.
International Standard Serial Number 2045-2322
Record control number a58025
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Click here to access online
Uniform Resource Identifier https://doi.org/10.1038/s41598-020-59580-5
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Suppress in OPAC No
Source of classification or shelving scheme Dewey Decimal Classification
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
10/14/2020   10/14/2020 Article Not Lost Dewey Decimal Classification     Reprints Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 10/14/2020

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