Knowledge Center Catalog

Multi-trait, multi-environment genomic prediction of durum wheat with genomic best linear unbiased predictor and deep learning methods (Record no. 61165)

MARC details
000 -LEADER
fixed length control field 03164nab|a22003617a|4500
001 - CONTROL NUMBER
control field 61165
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20240919020951.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 191208s2019||||sz |||p|op||||00||0|eng|d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1664-462X
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.3389/fpls.2019.01311
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Montesinos-Lopez, O.A.
Field link and sequence number I1706800
9 (RLIN) 2700
Miscellaneous information Genetic Resources Program
245 10 - TITLE STATEMENT
Title Multi-trait, multi-environment genomic prediction of durum wheat with genomic best linear unbiased predictor and deep learning methods
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. Switzerland :
Name of publisher, distributor, etc. Frontiers,
Date of publication, distribution, etc. 2019.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Open Access
520 ## - SUMMARY, ETC.
Summary, etc. Although durum wheat (Triticum turgidum var. durum Desf.) is a minor cereal crop representing just 5-7% of the world's total wheat crop, it is a staple food in Mediterranean countries, where it is used to produce pasta, couscous, bulgur and bread. In this paper, we cover multi-trait prediction of grain yield (GY), days to heading (DH) and plant height (PH) of 270 durum wheat lines that were evaluated in 43 environments (country-location-year combinations) across a broad range of water regimes in the Mediterranean Basin and other locations. Multi-trait prediction analyses were performed by implementing a multi-trait deep learning model (MTDL) with a feed-forward network topology and a rectified linear unit activation function with a grid search approach for the selection of hyper-parameters. The results of the multi-trait deep learning method were also compared with univariate predictions of the genomic best linear unbiased predictor (GBLUP) method and the univariate counterpart of the multi-trait deep learning method (UDL). All models were implemented with and without the genotype x environment interaction term. We found that the best predictions were observed without the genotype x environment interaction term in the UDL and MTDL methods. However, under the GBLUP method, the best predictions were observed when the genotype x environment interaction term was taken into account. We also found that in general the best predictions were observed under the GBLUP model; however, the predictions of the MTDL were very similar to those of the GBLUP model. This result provides more evidence that the GBLUP model is a powerful approach for genomic prediction, but also that the deep learning method is a practical approach for predicting univariate and multivariate traits in the context of genomic selection.
546 ## - LANGUAGE NOTE
Language note Text in English
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Hard wheat
Source of heading or term AGROVOC
9 (RLIN) 1142
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Marker-assisted selection
Source of heading or term AGROVOC
9 (RLIN) 10737
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Agronomic characters
Miscellaneous information AGROVOC
Source of heading or term
9 (RLIN) 1008
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Montesinos-Lopez, A.
9 (RLIN) 2702
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Tuberosa, R.
9 (RLIN) 2806
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Maccaferri, M.
9 (RLIN) 2805
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Sciara, G.
9 (RLIN) 11000
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Ammar, K.
Field link and sequence number INT2585
9 (RLIN) 844
Miscellaneous information Global Wheat Program
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Crossa, J.
Miscellaneous information Genetic Resources Program
Field link and sequence number CCJL01
9 (RLIN) 59
773 0# - HOST ITEM ENTRY
Related parts v. 10, art. 1311
Place, publisher, and date of publication Switzerland : Frontiers, 2019.
International Standard Serial Number 1664-462X
Title Frontiers in Plant Science
Record control number u56875
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Open Access through DSpace
Uniform Resource Identifier https://hdl.handle.net/10883/20598
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Suppress in OPAC No
Source of classification or shelving scheme Dewey Decimal Classification
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
12/08/2019   12/08/2019 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 12/08/2019

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