Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea (Record no. 59663)
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| 000 -LEADER | |
|---|---|
| fixed length control field | 03221nab a22004937a 4500 |
| 001 - CONTROL NUMBER | |
| control field | 59663 |
| 003 - CONTROL NUMBER IDENTIFIER | |
| control field | MX-TxCIM |
| 005 - DATE AND TIME OF LATEST TRANSACTION | |
| control field | 20250211020919.0 |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION | |
| fixed length control field | 180814s2018||||xxk|||p|op||||00||0|eng|d |
| 024 8# - OTHER STANDARD IDENTIFIER | |
| Standard number or code | https://doi.org/10.1038/s41598-018-30027-2 |
| 040 ## - CATALOGING SOURCE | |
| Original cataloging agency | MX-TxCIM |
| 041 ## - LANGUAGE CODE | |
| Language code of text/sound track or separate title | eng |
| 100 1# - MAIN ENTRY--PERSONAL NAME | |
| 9 (RLIN) | 6147 |
| Personal name | Roorkiwal, M. |
| 245 10 - TITLE STATEMENT | |
| Title | Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea |
| Medium | [Electronic Resource] |
| 260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT) | |
| Place of publication, distribution, etc. | London : |
| Name of publisher, distributor, etc. | Nature Publishing Group, |
| Date of publication, distribution, etc. | 2018. |
| 500 ## - GENERAL NOTE | |
| General note | Peer review |
| 500 ## - GENERAL NOTE | |
| General note | Open Access |
| 520 ## - SUMMARY, ETC. | |
| Summary, etc. | Genomic selection (GS) by selecting lines prior to field phenotyping using genotyping data has the potential to enhance the rate of genetic gains. Genotype × environment (G × E) interaction inclusion in GS models can improve prediction accuracy hence aid in selection of lines across target environments. Phenotypic data on 320 chickpea breeding lines for eight traits for three seasons at two locations were recorded. These lines were genotyped using DArTseq (1.6 K SNPs) and Genotyping-by-Sequencing (GBS; 89 K SNPs). Thirteen models were fitted including main effects of environment and lines, markers, and/or naïve and informed interactions to estimate prediction accuracies. Three cross-validation schemes mimicking real scenarios that breeders might encounter in the fields were considered to assess prediction accuracy of the models (CV2: incomplete field trials or sparse testing; CV1: newly developed lines; and CV0: untested environments). Maximum prediction accuracies for different traits and different models were observed with CV2. DArTseq performed better than GBS and the combined genotyping set (DArTseq and GBS) regardless of the cross validation scheme with most of the main effect marker and interaction models. Improvement of GS models and application of various genotyping platforms are key factors for obtaining accurate and precise prediction accuracies, leading to more precise selection of candidates. |
| 546 ## - LANGUAGE NOTE | |
| Language note | Text in English |
| 591 ## - CATALOGING NOTES | |
| Number of CIMMYT Informa | CIMMYT Informa : 2020 (September 27, 2018) |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| 9 (RLIN) | 1133 |
| Topical term or geographic name as entry element | Genotype environment interaction |
| Source of heading or term | AGROVOC |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Source of heading or term | AGROVOC |
| 9 (RLIN) | 2701 |
| Topical term or geographic name as entry element | Forecasting |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Source of heading or term | AGROVOC |
| 9 (RLIN) | 2846 |
| Topical term or geographic name as entry element | Chickpeas |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Source of heading or term | AGROVOC |
| 9 (RLIN) | 1132 |
| Topical term or geographic name as entry element | Genomics |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| 9 (RLIN) | 1934 |
| Personal name | Jarquín, D. |
| 700 0# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Muneendra K. Singh |
| 9 (RLIN) | 7894 |
| 700 0# - ADDED ENTRY--PERSONAL NAME | |
| 9 (RLIN) | 7895 |
| Personal name | Pooran M. Gaur |
| 700 0# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Chellapilla Bharadwaj |
| 9 (RLIN) | 7896 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Rathore, A. |
| Field link and sequence number | 001712937 |
| Miscellaneous information | Excellence in Breeding |
| -- | Genetic Resources Program |
| 9 (RLIN) | 7897 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Howard, R. |
| 9 (RLIN) | 7898 |
| 700 0# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Samineni Srinivasan |
| 9 (RLIN) | 7899 |
| 700 0# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Ankit Jain |
| 9 (RLIN) | 7900 |
| 700 0# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Vanika Garg |
| 9 (RLIN) | 7901 |
| 700 0# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Sandip Kale |
| 9 (RLIN) | 7902 |
| 700 0# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Annapurna Chitikineni |
| 9 (RLIN) | 7903 |
| 700 0# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Shailesh Tripathi |
| 9 (RLIN) | 7904 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Jones, E. |
| 9 (RLIN) | 7905 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| 9 (RLIN) | 5987 |
| Personal name | Robbins, K. |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Crossa, J. |
| Miscellaneous information | Genetic Resources Program |
| Field link and sequence number | CCJL01 |
| 9 (RLIN) | 59 |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| 9 (RLIN) | 5901 |
| Personal name | Varshney, R.K. |
| 773 0# - HOST ITEM ENTRY | |
| Title | Scientific Reports |
| Related parts | v. 8, art. 11701 |
| International Standard Serial Number | 2045-2322 |
| Record control number | a58025 |
| 856 4# - ELECTRONIC LOCATION AND ACCESS | |
| Link text | Open Access through DSpace |
| Uniform Resource Identifier | https://hdl.handle.net/10883/19600 |
| 942 ## - ADDED ENTRY ELEMENTS (KOHA) | |
| Koha item type | Article |
| Suppress in OPAC | No |
| Source of classification or shelving scheme | Dewey Decimal Classification |
| Date last seen | Total Checkouts | Price effective from | Koha item type | Lost status | Source of classification or shelving scheme | Damaged status | Not for loan | Collection code | Withdrawn status | Home library | Current library | Date acquired |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 08/14/2018 | 08/14/2018 | Article | Not Lost | Dewey Decimal Classification | CIMMYT Staff Publications Collection | CIMMYT Knowledge Center: John Woolston Library | CIMMYT Knowledge Center: John Woolston Library | 08/14/2018 |