Knowledge Center Catalog

Genome-wide association study in Asia-adapted tropical maize reveals novel and explored genomic regions for sorghum downy mildew resistance (Record no. 59081)

MARC details
000 -LEADER
fixed length control field 02700nab a22003617a 4500
001 - CONTROL NUMBER
control field 59081
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20230818155457.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 180118s2017 -uk|||p|op||| 00| 0 eng d
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1038/s41598-017-18690-3
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Rashid, Z.
Field link and sequence number N1705728
Miscellaneous information Global Maize Program
9 (RLIN) 2242
245 10 - TITLE STATEMENT
Title Genome-wide association study in Asia-adapted tropical maize reveals novel and explored genomic regions for sorghum downy mildew resistance
Medium [Electronic Resource]
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. London :
Name of publisher, distributor, etc. Nature Publishing Group,
Date of publication, distribution, etc. 2018.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Open Access
520 ## - SUMMARY, ETC.
Summary, etc. Globally, downy mildews are among the important foliar diseases of maize that cause significant yield losses. We conducted a genome-wide association study for sorghum downy mildew (SDM; Peronosclerospora sorghi) resistance in a panel of 368 inbred lines adapted to the Asian tropics. High density SNPs from Genotyping-by-sequencing were used in GWAS after controlling for population structure and kinship in the panel using a single locus mixed model. The study identified a set of 26 SNPs that were significantly associated with SDM resistance, with Bonferroni corrected P values ≤ 0.05. Among all the identified SNPs, the minor alleles were found to be favorable to SDM resistance in the mapping panel. Trend regression analysis with 16 independent genetic variants including 12 SNPs and four haplotype blocks identified SNP S2_6154311 on chromosome 2 with P value 2.61E-24 and contributing 26.7% of the phenotypic variation. Six of the SNPs/haplotypes were within the same chromosomal bins as the QTLs for SDM resistance mapped in previous studies. Apart from this, eight novel genomic regions for SDM resistance were identified in this study; they need further validation before being applied in the breeding pipeline. Ten SNPs identified in this study were co-located in reported mildew resistance genes.
526 ## - STUDY PROGRAM INFORMATION NOTE
Program name Maize CRP
Maize Flagship Projects FP3 - Stress resilient and nutritious maize
546 ## - LANGUAGE NOTE
Language note Text in English
591 ## - CATALOGING NOTES
Number of CIMMYT Informa CIMMYT Informa : 2005 (January 18, 2018)
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Maize
Miscellaneous information AGROVOC
Source of heading or term
9 (RLIN) 1173
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genomes
Miscellaneous information AGROVOC
Source of heading or term
9 (RLIN) 1131
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 6097
Topical term or geographic name as entry element Mildews
Miscellaneous information AGROVOC
651 #7 - SUBJECT ADDED ENTRY--GEOGRAPHIC NAME
9 (RLIN) 4026
Geographic name Asia
Source of heading or term AGROVOC
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Pawan Kumar Singh
Miscellaneous information Global Wheat Program
Field link and sequence number INT2868
9 (RLIN) 868
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 6100
Personal name Hindu, V.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 862
Personal name Zaidi, P.H.
Miscellaneous information Global Maize Program
Field link and sequence number INT2823
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Prasanna, B.M.
Miscellaneous information Global Maize Program
Field link and sequence number INT3057
9 (RLIN) 887
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 1434
Personal name Nair, S.K.
Miscellaneous information Global Maize Program
Field link and sequence number INT3232
773 0# - HOST ITEM ENTRY
Related parts v. 8, no. 366
Title Nature Scientific reports
Record control number a58025
International Standard Serial Number 2045-2322
856 4# - ELECTRONIC LOCATION AND ACCESS
Uniform Resource Identifier https://hdl.handle.net/10883/19185
Link text Open Access through DSpace
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Source of classification or shelving scheme Dewey Decimal Classification
Koha item type Article
Suppress in OPAC No
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
01/18/2018   01/18/2018 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 01/18/2018

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