Knowledge Center Catalog

Genomic bayesian prediction model for count data with genotype X environment interaction (Record no. 58163)

MARC details
000 -LEADER
fixed length control field 02510nab a22003737a 4500
001 - CONTROL NUMBER
control field 58163
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20240919020949.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 150722s2016 xxu|||p|op||| 00| 0 eng d
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1534/g3.116.028118
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
100 1# - MAIN ENTRY--PERSONAL NAME
9 (RLIN) 2702
Personal name Montesinos-Lopez, A.
245 10 - TITLE STATEMENT
Title Genomic bayesian prediction model for count data with genotype X environment interaction
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. Bethesda, MD :
Name of publisher, distributor, etc. Genetics Society of America,
Date of publication, distribution, etc. 2016.
500 ## - GENERAL NOTE
General note Open Access
500 ## - GENERAL NOTE
General note Peer review
520 ## - SUMMARY, ETC.
Summary, etc. Genomic tools allow the study of the whole genome and are facilitating the study of genotype-environment combinations and their relationship with phenotype. However, most genomic prediction models developed so far are appropriate for Gaussian phenotypes. For this reason, appropriate genomic prediction models are needed for count data, since the conventional regression models used on count data with a large sample size (nT) and a small number of parameters (p) cannot be used for genomic-enabled prediction where the number of parameters (p) is larger than the sample size (nT). Here we propose a Bayesian mixed negative binomial (BMNB) genomic regression model for counts that takes into account genotype by environment (G×E) interaction. We also provide all the full conditional distributions to implement a Gibbs sampler. We evaluated the proposed model using a simulated data set and a real wheat data set from the International Maize and Wheat Improvement Center (CIMMYT) and collaborators. Results indicate that our BMNB model is a viable alternative for analyzing count data.
526 ## - STUDY PROGRAM INFORMATION NOTE
Program name Wheat CRP
Wheat Flagship Projects FP2 - Novel diversity and tools adapt to climate change and resource constraints
546 ## - LANGUAGE NOTE
Language note Text in English
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 4013
Topical term or geographic name as entry element Bayesian theory
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 1132
Topical term or geographic name as entry element Genomics
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 1133
Topical term or geographic name as entry element Genotype environment interaction
Source of heading or term AGROVOC
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 2700
Personal name Montesinos-Lopez, O.A.
Miscellaneous information Genetic Resources Program
Field link and sequence number I1706800
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 907
Personal name Burgueño, J.
Miscellaneous information Genetic Resources Program
Field link and sequence number INT3239
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 2704
Personal name Eskridge, K.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 2681
Personal name Falconi, E.E.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 913
Personal name Xinyao He
Miscellaneous information Global Wheat Program
Field link and sequence number INT3297
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Pawan Kumar Singh
Miscellaneous information Global Wheat Program
Field link and sequence number INT2868
9 (RLIN) 868
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 4014
Personal name Cichy, K.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Crossa, J.
Miscellaneous information Genetic Resources Program
Field link and sequence number CCJL01
9 (RLIN) 59
773 0# - HOST ITEM ENTRY
Record control number u56922
International Standard Serial Number 2160-1836
Place, publisher, and date of publication Bethesda, MD : Genetics Society of America,
Title G3
Related parts v. 7, no. 2, p. 1165-1177
856 4# - ELECTRONIC LOCATION AND ACCESS
Uniform Resource Identifier http://hdl.handle.net/10883/18637
Link text Open Access through DSpace
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Source of classification or shelving scheme Dewey Decimal Classification
Koha item type Article
Suppress in OPAC No
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
01/19/2017   01/19/2017 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 01/19/2017

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