MARC details
| 000 -LEADER |
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| fixed length control field |
03821nab a22004937a 4500 |
| 001 - CONTROL NUMBER |
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| control field |
57213 |
| 003 - CONTROL NUMBER IDENTIFIER |
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| control field |
MX-TxCIM |
| 005 - DATE AND TIME OF LATEST TRANSACTION |
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| control field |
20240919021225.0 |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION |
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| fixed length control field |
151221s2015 xxu|||p|op||| 00| 0 eng d |
| 024 8# - OTHER STANDARD IDENTIFIER |
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| Standard number or code |
https://doi.org/10.1534/g3.114.016097 |
| 040 ## - CATALOGING SOURCE |
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| Original cataloging agency |
MX-TxCIM |
| 041 ## - LANGUAGE CODE |
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| Language code of text/sound track or separate title |
eng |
| 100 1# - MAIN ENTRY--PERSONAL NAME |
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| 9 (RLIN) |
2348 |
| Personal name |
Lopez-Cruz, M. |
| 245 10 - TITLE STATEMENT |
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| Title |
Increased prediction accuracy in wheat breeding trials using a marker x environment interaction Genomic Selection model |
| 260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT) |
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| Place of publication, distribution, etc. |
Bethesda, MD : |
| Name of publisher, distributor, etc. |
Genetics Society of America, |
| Date of publication, distribution, etc. |
2015. |
| 500 ## - GENERAL NOTE |
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| General note |
Open Access |
| 500 ## - GENERAL NOTE |
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| General note |
Peer review |
| 520 ## - SUMMARY, ETC. |
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| Summary, etc. |
ABSTRACT Genomic selection (GS) models use genome-wide genetic information to predict genetic values of candidates of selection. Originally, these models were developed without considering genotype · environment interaction( G·E). Several authors have proposed extensions of the single-environment GS model that accommodate G·E using either covariance functions or environmental covariates. In this study, we model G·E using a marker · environment interaction (M·E) GS model; the approach is conceptually simple and can be implemented with existing GS software.We discuss how themodel can be implemented by using an explicit regression of phenotypes on markers or using co-variance structures (a genomic best linear unbiased prediction-type model). We used the M·E model to analyze three CIMMYT wheat data sets (W1, W2, and W3), where more than 1000 lines were genotyped using genotyping-by-sequencing and evaluated at CIMMYT’s research station in Ciudad Obregon, Mexico, under simulated environmental conditions that covered different irrigation levels, sowing dates and planting systems.We compared the M·E model with a stratified (i.e., within-environment) analysis and with a standard (across-environment) GS model that assumes that effects are constant across environments (i.e., ignoring G·E). The prediction accuracy of the M·E model was substantially greater of that of an across-environment analysis that ignores G·E. Depending on the prediction problem, the M·E model had either similar or greater levels of prediction accuracy than the stratified analyses. The M·E model decomposes marker effects and genomic values into components that are stable across environments (main effects) and others that are environment-specific (interactions). Therefore, in principle, the interaction model could shed light over which variants have effects that are stable across environments and which ones are responsible for G·E. The data set and the scripts required to reproduce the analysis are publicly available as Supporting Information. |
| 536 ## - FUNDING INFORMATION NOTE |
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| Text of note |
Global Wheat Program |
| 536 ## - FUNDING INFORMATION NOTE |
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| Text of note |
Genetic Resources Program |
| 546 ## - LANGUAGE NOTE |
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| Language note |
Text in english |
| 594 ## - STAFFID |
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| StaffID |
INT2902 |
| 594 ## - STAFFID |
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| StaffID |
INT2692 |
| 594 ## - STAFFID |
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| StaffID |
INT0610 |
| 594 ## - STAFFID |
|---|
| StaffID |
N1203511 |
| 594 ## - STAFFID |
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| StaffID |
CCAG01 |
| 594 ## - STAFFID |
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| StaffID |
CCJL01 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| 9 (RLIN) |
1132 |
| Topical term or geographic name as entry element |
Genomics |
| Source of heading or term |
AGROVOC |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Wheat |
| Miscellaneous information |
AGROVOC |
| Source of heading or term |
|
| 9 (RLIN) |
1310 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Plant breeding |
| Miscellaneous information |
AGROVOC |
| Source of heading or term |
|
| 9 (RLIN) |
1203 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| 9 (RLIN) |
8685 |
| Topical term or geographic name as entry element |
Artificial Selection |
| Source of heading or term |
AGROVOC |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| 9 (RLIN) |
1848 |
| Topical term or geographic name as entry element |
Genetic markers |
| Source of heading or term |
AGROVOC |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| 9 (RLIN) |
2092 |
| Personal name |
Poland, J.A. |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| 9 (RLIN) |
2093 |
| Personal name |
Jannink, J.L. |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| 9 (RLIN) |
2349 |
| Personal name |
De los Campos, G. |
| Miscellaneous information |
Genetic Resources Program |
| Field link and sequence number |
CCAG01 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Singh, R.P. |
| Miscellaneous information |
Global Wheat Program |
| Field link and sequence number |
INT0610 |
| 9 (RLIN) |
825 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| 9 (RLIN) |
851 |
| Personal name |
Dreisigacker, S. |
| Miscellaneous information |
Global Wheat Program |
| Field link and sequence number |
INT2692 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| 9 (RLIN) |
871 |
| Personal name |
Bonnett, D.G. |
| Miscellaneous information |
Global Wheat Program |
| Field link and sequence number |
INT2902 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| 9 (RLIN) |
969 |
| Personal name |
Autrique, E. |
| Miscellaneous information |
Global Wheat Program |
| Field link and sequence number |
N1203511 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Crossa, J. |
| Miscellaneous information |
Genetic Resources Program |
| Field link and sequence number |
CCJL01 |
| 9 (RLIN) |
59 |
| 773 0# - HOST ITEM ENTRY |
|---|
| Record control number |
u56922 |
| International Standard Serial Number |
2160-1836 |
| Place, publisher, and date of publication |
Bethesda, MD : Genetics Society of America, 2011- |
| Title |
G3 |
| Related parts |
v. 5, no. 4, p. 569-582 |
| 856 4# - ELECTRONIC LOCATION AND ACCESS |
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| Link text |
Open Access through DSpace |
| Uniform Resource Identifier |
http://hdl.handle.net/10883/16842 |
| 942 ## - ADDED ENTRY ELEMENTS (KOHA) |
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| Source of classification or shelving scheme |
Dewey Decimal Classification |
| Koha item type |
Article |
| Suppress in OPAC |
No |