Knowledge Center Catalog

Linkage analysis and map construction in genetic populations of clonal F1 and double cross (Record no. 56923)

MARC details
000 -LEADER
fixed length control field 02626nab a22003497a 4500
001 - CONTROL NUMBER
control field 56923
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20201204192523.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 150722s2015 xxu|||p|op||| 00| 0 eng d
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1534/g3.114.016022
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
100 1# - MAIN ENTRY--PERSONAL NAME
9 (RLIN) 1387
Personal name Luyan Zhang
245 1# - TITLE STATEMENT
Title Linkage analysis and map construction in genetic populations of clonal F1 and double cross
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. Bethesda, MD :
Name of publisher, distributor, etc. Genetics Society of America,
Date of publication, distribution, etc. 2015.
500 ## - GENERAL NOTE
General note Open Access
500 ## - GENERAL NOTE
General note Peer review
520 ## - SUMMARY, ETC.
Summary, etc. In this study, we considered four categories of molecular markers based on the number of distinguishable alleles at the marker locus and the number of distinguishable genotypes in clonal F1 progenies. For two marker loci, there are nine scenarios that allow the estimation of female, male, and/ or combined recombination frequencies. In a double cross population derived from four inbred lines, five categories of markers are classified and another five scenarios are present for recombination frequency estimation. Theoretical frequencies of identifiable genotypes were given for each scenario, from which the maximum likelihood estimates of one or more of the three recombination frequencies could be estimated. If there was no analytic solution, then Newton-Raphson method was used to acquire a numerical solution. We then proposed to use an algorithm in Traveling Salesman Problem to determine the marker order. Finally, we proposed a procedure to build the two haploids of the female parent and the two haploids of the male parent in clonal F1. Once the four haploids were built, clonal F1 hybrids could be exactly regarded as a double cross population. Efficiency of the proposed methods was demonstrated in simulated clonal F1 populations and one actual maize double cross. Extensive comparisons with software JoinMap4.1, OneMap, and R/qtl show that the methodology proposed in this article can build more accurate linkage maps in less time.
536 ## - FUNDING INFORMATION NOTE
Text of note Genetic Resources Program
546 ## - LANGUAGE NOTE
Language note Text in english
591 ## - CATALOGING NOTES
Number of CIMMYT Informa CIMMYT Informa No. 1944
594 ## - STAFFID
StaffID CLIH01
594 ## - STAFFID
StaffID INT2542
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 1390
Topical term or geographic name as entry element Clonal F1
650 10 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 1393
Topical term or geographic name as entry element Double cross
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 1394
Topical term or geographic name as entry element Linkage analysis
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 2084
Topical term or geographic name as entry element Chromosome mapping
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 8955
Topical term or geographic name as entry element Clones
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 4190
Topical term or geographic name as entry element Genetic maps
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 8632
Topical term or geographic name as entry element Recombinant DNA
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 1848
Topical term or geographic name as entry element Genetic markers
Source of heading or term AGROVOC
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 764
Personal name Huihui Li
Miscellaneous information Genetic Resources Program
Field link and sequence number CLIH01
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 842
Personal name Jiankang Wang
Miscellaneous information Genetic Resources Program
Field link and sequence number INT2542
773 0# - HOST ITEM ENTRY
Record control number u56922
International Standard Serial Number 2160-1836
Place, publisher, and date of publication Bethesda, MD : Genetics Society of America, 2011-
Title G3: Genes, Genomes, Genetics
Related parts v. 5, no. 3, p. 427-439
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Open Access through DSpace
Uniform Resource Identifier http://hdl.handle.net/10883/4537
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Source of classification or shelving scheme Dewey Decimal Classification
Koha item type Article
Suppress in OPAC No
Holdings
Date last seen Total Checkouts Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
07/22/2015   07/22/2015 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 07/22/2015

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