A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits (Record no. 56897)

000 -LEADER
fixed length control field 03727 ab a22005897a 4500
001 - CONTROL NUMBER
control field a56897
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20191009215557.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 150521s2015 enk|||p|sp||| 00| 0 eng d
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1186/s12864-015-1424-5
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
100 1# - MAIN ENTRY--PERSONAL NAME
9 (RLIN) 764
Personal name Huihui Li
Miscellaneous information Genetic Resources Program
Field link and sequence number CLIH01
245 10 - TITLE STATEMENT
Title A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits
Medium [Electronic Resource]
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. London :
Name of publisher, distributor, etc. BioMed Central,
Date of publication, distribution, etc. 2015.
500 ## - GENERAL NOTE
General note Open Access
500 ## - GENERAL NOTE
General note Peer review
520 ## - SUMMARY, ETC.
Summary, etc. Background: Genotyping-by-sequencing (GBS) is a high-throughput genotyping approach that is starting to be used in several crop species, including bread wheat. Anchoring GBS tags on chromosomes is an important step towards utilizing them for wheat genetic improvement. Here we use genetic linkage mapping to construct a consensus map containing 28644 GBS markers. Results: Three RIL populations, PBW343 × Kingbird, PBW343 × Kenya Swara and PBW343 × Muu, which share a common parent, were used to minimize the impact of potential structural genomic variation on consensus-map quality. The consensus map comprised 3757 unique positions, and the average marker distance was 0.88 cM, obtained by calculating the average distance between two adjacent unique positions. Significant variation of segregation distortion was observed across the three populations. The consensus map was validated by comparing positions of known rust resistance genes, and comparing them to wheat reference genome sequences recently published by the International Wheat Genome Sequencing Consortium, Rye and Ae. tauschii genomes. Three well-characterized rust resistance genes (Sr58/Lr46/Yr29, Sr2/Yr30/Lr27, and Sr57/Lr34/Yr18) and 15 published QTLs for wheat rusts were validated with high resolution. Fifty-two per cent of GBS tags on the consensus map were successfully aligned through BLAST to the right chromosomes on the wheat reference genome sequence. Conclusion: The consensus map should provide a useful basis for analyzing genome-wide variation of complex traits. The identified genes can then be explored as genetic markers to be used in genomic applications in wheat breeding.
536 ## - FUNDING INFORMATION NOTE
Text of note Genetic Resources Program
536 ## - FUNDING INFORMATION NOTE
Text of note Global Wheat Program
546 ## - LANGUAGE NOTE
Language note Text in english
591 ## - CATALOGING NOTES
Number of CIMMYT Informa CIMMYT Informa No. 1936
594 ## - STAFFID
StaffID CLIH01
594 ## - STAFFID
StaffID I1705725
594 ## - STAFFID
StaffID INT0610
594 ## - STAFFID
StaffID INT3239
594 ## - STAFFID
StaffID INT2843
594 ## - STAFFID
StaffID INT1422
594 ## - STAFFID
StaffID INT3332
594 ## - STAFFID
StaffID INT3049
594 ## - STAFFID
StaffID INT3098
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Consensus map
9 (RLIN) 1053
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genotyping-by-sequencing (GBS)
9 (RLIN) 1135
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element QTL mapping
9 (RLIN) 1230
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Rust resistance
9 (RLIN) 1250
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Segregation distortion
9 (RLIN) 1254
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Wheat
9 (RLIN) 1310
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Quantitative Trait Loci
9 (RLIN) 1853
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Rusts
9 (RLIN) 1251
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Disease resistance
9 (RLIN) 1077
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Chromosome mapping
9 (RLIN) 2084
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element DNA Sequence
9 (RLIN) 8666
Source of heading or term AGROVOC
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 1409
Personal name Kilian, A.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 456
Personal name Carling, J.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 705
Personal name Song, J.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 397
Personal name Huerta-Espino, J.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 785
Personal name Vikram, P.
Miscellaneous information Genetic Resources Program
Field link and sequence number I1705725
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 828
Personal name Payne, T.S.
Miscellaneous information Genetic Resources Program
Field link and sequence number INT1422
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 885
Personal name Wenzl, P.
Miscellaneous information Genetic Resources Program
Field link and sequence number INT3049
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 892
Personal name Sukhwinder-Singh
Miscellaneous information Genetic Resources Program
Field link and sequence number INT3098
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 907
Personal name Burgueño, J.
Miscellaneous information Genetic Resources Program
Field link and sequence number INT3239
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 825
Personal name Singh, R.P.
Miscellaneous information Global Wheat Program
Field link and sequence number INT0610
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 867
Personal name Bhavani, S.
Miscellaneous information Global Wheat Program
Field link and sequence number INT2843
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 922
Personal name Sehgal, D.
Miscellaneous information Global Wheat Program
Field link and sequence number INT3332
773 0# - HOST ITEM ENTRY
Record control number u56896
International Standard Serial Number 1471-2164
Place, publisher, and date of publication London : BioMed Central.
Title BMC Genomics
Related parts v. 16, p. 216
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Access only for CIMMYT Staff
Uniform Resource Identifier http://hdl.handle.net/10883/4582
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Source of classification or shelving scheme
Koha item type Article
Suppress in OPAC 0
Holdings
Withdrawn status Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Permanent Location Current Location Date acquired Date last seen Price effective from Koha item type
  Not Lost       CIMMYT Staff Publications Collection CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 2015-05-21 2015-05-21 2015-05-21 Article
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Centro Internacional de Mejoramiento de Maíz y Trigo (CIMMYT) © Copyright 2015. Carretera México-Veracruz. Km. 45, El Batán, Texcoco, México, C.P. 56237.
Si tiene cualquier pregunta, contáctenos a CIMMYT-Knowledge-Center@cgiar.org