Knowledge Center Catalog

Development of a species-specific PCR to detect the cereal cyst nematode, Heterodera latipons (Record no. 30108)

MARC details
000 -LEADER
fixed length control field 03033nab a22004577a 4500
001 - CONTROL NUMBER
control field G98112
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20230417202533.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 210709s2013 ne |||p|op||| 00| 0 eng d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1568-5411 (Online)
022 0# - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1388-5545
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1163/15685411-00002713
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) CIS-7261
100 1# - MAIN ENTRY--PERSONAL NAME
9 (RLIN) 404
Personal name Toumi, F.
245 10 - TITLE STATEMENT
Title Development of a species-specific PCR to detect the cereal cyst nematode, Heterodera latipons
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. Leiden (Netherlands) :
Name of publisher, distributor, etc. Brill,
Date of publication, distribution, etc. 2013.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Peer-review: Yes - Open Access: Yes|http://science.thomsonreuters.com/cgi-bin/jrnlst/jlresults.cgi?PC=MASTER&ISSN=1388-5545
520 ## - SUMMARY, ETC.
Summary, etc. Several Heterodera species can reduce the yield of wheat and barley, among which H. avenae, H. filipjevi and H. latipons are economically the most important. Their identification, based on morphological characteristics, is not straightforward but can be made easier using molecular techniques. In this study, we developed species-specific primers for the detection of H. latipons. The actin gene of eight Heterodera species was partially sequenced and, after purifying and sequencing the PCR products, all sequences were aligned to find unique sites. The alignment showed moderate to very high similarities between the species. However, a small fragment of the actin gene was suitable for the construction of a potentially useful species-specific primer for H. latipons. The optimised PCR was subsequently tested with several populations of 14 Heterodera species and a single population of Punctodera punctata. Heterodera latipons was represented by 16 populations originating from six different countries. The primer set (Hlat-act), designed using AlleleID 7.73, was shown to be very specific. To test its sensitivity further, the PCR was conducted on DNA extracted from five second-stage juveniles (J2) of H. latipons mixed with five or 100 J2 belonging to H. avenae. The PCR was able to detect up to 1:10 dilution of the DNA obtained from five J2. The results showed that a specific and sensitive H. latipons species-specific PCR was constructed.
536 ## - FUNDING INFORMATION NOTE
Text of note Global Wheat Program
546 ## - LANGUAGE NOTE
Language note Text in English
591 ## - CATALOGING NOTES
Affiliation CIMMYT Informa No. 1860
594 ## - STAFFID
StaffID INT2918|INT2410
595 ## - COLLECTION
Collection CIMMYT Staff Publications Collection
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Actin
Source of heading or term AGROVOC
9 (RLIN) 30707
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genes
Source of heading or term AGROVOC
9 (RLIN) 3563
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Diagnosis
Source of heading or term AGROVOC
9 (RLIN) 5807
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Nucleotide sequence
Source of heading or term AGROVOC
9 (RLIN) 1937
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genetic markers
Source of heading or term AGROVOC
9 (RLIN) 1848
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 363
Personal name Waeyenberge, L.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 358
Personal name Viaene, N.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Dababat, A.A.
9 (RLIN) 874
Field link and sequence number INT2918
Miscellaneous information Global Wheat Program
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Nicol, J.M.
9 (RLIN) 228
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Ogbonnaya, F.C.
9 (RLIN) 237
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Moens, M.
9 (RLIN) 212
773 0# - HOST ITEM ENTRY
Title Nematology
Related parts v. 15, no. 6, p. 709-717
Place, publisher, and date of publication Leiden (Netherlands) : Brill, 2013.
Record control number 57516
International Standard Serial Number 1568-5411
856 4# - ELECTRONIC LOCATION AND ACCESS
Uniform Resource Identifier https://hdl.handle.net/20.500.12665/596
Link text Access only for CIMMYT Staff
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Source of classification or shelving scheme Dewey Decimal Classification
Suppress in OPAC No
Holdings
Date last seen Total Checkouts Full call number Price effective from Koha item type Lost status Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
07/03/2017   CIS-7261 07/03/2017 Article Not Lost     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 07/03/2017

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