Knowledge Center Catalog

Comparative LD mapping using single SNPs and haplotypes identifies QTL for plant height and biomass as secondary traits of drought tolerance in maize (Record no. 28598)

MARC details
000 -LEADER
fixed length control field 03455nab a22004937a 4500
001 - CONTROL NUMBER
control field G95390
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20230731172209.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 210621s2012 ne |||p|op||| 00| 0 eng d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1572-9788 (Online)
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1380-3743
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1007/s11032-011-9631-5
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) CIS-6363
100 0# - MAIN ENTRY--PERSONAL NAME
Personal name Yanli Lu
9 (RLIN) 6408
245 10 - TITLE STATEMENT
Title Comparative LD mapping using single SNPs and haplotypes identifies QTL for plant height and biomass as secondary traits of drought tolerance in maize
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. Dordrecht (Netherlands) :
Name of publisher, distributor, etc. Springer,
Date of publication, distribution, etc. 2012.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Peer-review: Yes - Open Access: Yes|http://science.thomsonreuters.com/cgi-bin/jrnlst/jlresults.cgi?PC=MASTER&ISSN=1380-3743
520 ## - SUMMARY, ETC.
Summary, etc. Drought often delays developmental events so that plant height and above-ground biomass are reduced, resulting in yield loss due to inadequate photosynthate. In this study, plant height and biomass measured by the Normalized Difference Vegetation Index (NDVI) were used as criteria for drought tolerance. A total of 305 lines representing temperate, tropical and subtropical maize germplasm were genotyped using two single nucleotide polymorphism (SNP) chips each containing 1536 markers, from which 2052 informative SNPs and 386 haplotypes each constructed with two or more SNPs were used for linkage disequilibrium (LD) or association mapping. Single SNP- and haplotype-based LD mapping identified two significant SNPs and three haplotype loci [a total of four quantitative trait loci (QTL)] for plant height under well-watered and water-stressed conditions. For biomass, 32 SNPs and 12 haplotype loci (30 QTL) were identified using NDVIs measured at seven stages under the two water regimes. Some significant SNP and haplotype loci for NDVI were shared by different stages. Comparing significant loci identified by single SNP- and haplotype-based LD mapping, we found that six out of the 14 chromosomal regions defined by haplotype loci each included at least one significant SNP for the same trait. Significant SNP haplotype loci explained much higher phenotypic variation than individual SNPs. Moreover, we found that two significant SNPs (two QTL) and one haplotype locus were shared by plant height and NDVI. The results indicate the power of comparative LD mapping using single SNPs and SNP haplotypes with QTL shared by plant height and biomass as secondary traits for drought tolerance in maize.
536 ## - FUNDING INFORMATION NOTE
Text of note Global Maize Program
546 ## - LANGUAGE NOTE
Language note Text in English
591 ## - CATALOGING NOTES
Affiliation CIMMYT Informa No. 1767
594 ## - STAFFID
StaffID INT2735
595 ## - COLLECTION
Collection CIMMYT Staff Publications Collection
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 1173
Topical term or geographic name as entry element Maize
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 1082
Topical term or geographic name as entry element Drought tolerance
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 1897
Topical term or geographic name as entry element Biomass
Source of heading or term AGROVOC
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Single nucleotide polymorphisms
Miscellaneous information AGROVOC
9 (RLIN) 10805
700 0# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 6518
Personal name Jie Xu
700 0# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 20482
Personal name Zhimin Yuan
700 0# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 8385
Personal name Zhuanfang Hao
700 0# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 2730
Personal name Chuanxiao Xie
700 0# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 4207
Personal name Xinhai Li
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 17711
Personal name Shah, T.
700 0# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 6533
Personal name Hai Lan
700 0# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 6604
Personal name Shihuang Zhang
700 0# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 6522
Personal name Tingzhao Rong
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 857
Personal name Yunbi Xu
Miscellaneous information Global Maize Program
Field link and sequence number INT2735
773 0# - HOST ITEM ENTRY
Title Molecular Breeding
Related parts v. 30, no. 1, p. 407-418
Place, publisher, and date of publication Dordrecht (Netherlands) : Springer, 2012.
Record control number G78961
International Standard Serial Number 1380-3743
856 4# - ELECTRONIC LOCATION AND ACCESS
Uniform Resource Identifier https://hdl.handle.net/20.500.12665/540
Link text Access only for CIMMYT Staff
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Source of classification or shelving scheme Dewey Decimal Classification
Suppress in OPAC No
Holdings
Date last seen Total Checkouts Full call number Price effective from Koha item type Lost status Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
07/03/2017   CIS-6363 07/03/2017 Article Not Lost     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 07/03/2017

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