Knowledge Center Catalog

A high-throughput, low cost gel-based SNP assay for positional cloning and marker assisted breeding of useful genes in cereals (Record no. 27853)

MARC details
000 -LEADER
fixed length control field 02838nab a22004217a 4500
001 - CONTROL NUMBER
control field G93445
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20230804205719.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 210804t2009 xxk|||p|op||| 00| 0 eng d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1439-0523 (Online)
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 0179-9541
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1111/j.1439-0523.2008.01618.x
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) CIS-5626
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Xu, X.
9 (RLIN) 21840
245 12 - TITLE STATEMENT
Title A high-throughput, low cost gel-based SNP assay for positional cloning and marker assisted breeding of useful genes in cereals
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. United Kingdom :
Name of publisher, distributor, etc. Wiley,
Date of publication, distribution, etc. 2009.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Peer-review: Yes - Open Access: Yes|http://science.thomsonreuters.com/cgi-bin/jrnlst/jlresults.cgi?PC=MASTER&ISSN=0179-9541
520 ## - SUMMARY, ETC.
Summary, etc. Several SNP (single nucleotide polymorphism) genotyping methods have been developed in the past most of which require sophisticated instrumentation and large initial investments. We describe here a high-throughput SSCP (single strand conformation polymorphism) system on our HEGS (high efficiency genome scanning) platform, which is simple, accurate, cost effective and requires neither restriction digestion of the amplification products nor elaborate post-PCR processing detection. Several parameters critical to SSCP analysis were optimized viz., gel matrix and concentration, gel running temperature, buffer composition, running conditions and PCR primer design so as to identify SNPs in amplicons ranging from 100 to 750 bp in size. A simple post-PCR processing system was developed using fluorescent dye for quick and easy detection of SNP polymorphism. HEGS-SSCP was also found to be useful in uncovering simple sequence repeat differences between different genotypes that differ by one or few di/tri nucleotide repeats. The practical utility of this system is illustrated with two successful efforts towards construction of high resolution linkage maps of a lesion mimic locus on chromosome 7 and a major quantitative trait locus conditioning field blast resistance on chromosome 4 in rice.
536 ## - FUNDING INFORMATION NOTE
Text of note Global Maize Program
546 ## - LANGUAGE NOTE
Language note Text in English
591 ## - CATALOGING NOTES
Affiliation John Wiley
594 ## - STAFFID
StaffID INT2925
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Single nucleotide polymorphisms
Source of heading or term AGROVOC
9 (RLIN) 10805
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element PCR
Source of heading or term AGROVOC
9 (RLIN) 12563
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genomics
Source of heading or term AGROVOC
9 (RLIN) 1132
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Marker-assisted selection
Source of heading or term AGROVOC
9 (RLIN) 10737
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genetic markers
Source of heading or term AGROVOC
9 (RLIN) 1848
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Cereals
Source of heading or term AGROVOC
9 (RLIN) 1036
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 875
Personal name BABU, R.
Miscellaneous information Global Maize Program
Field link and sequence number INT2925
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 21841
Personal name Fujimura, T.
700 0# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 4170
Personal name Shinji Kawasaki
773 0# - HOST ITEM ENTRY
Title Plant Breeding
Related parts v. 128, no. 4, p. 325-331
Place, publisher, and date of publication United Kingdom : Wiley, 2009.
Record control number G445212
International Standard Serial Number 1439-0523
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Access only for CIMMYT Staff
Uniform Resource Identifier https://hdl.handle.net/20.500.12665/337
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Source of classification or shelving scheme Dewey Decimal Classification
Suppress in OPAC No
Holdings
Date last seen Total Checkouts Full call number Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
07/05/2017   CIS-5626 07/05/2017 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 07/05/2017

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