Knowledge Center Catalog

Cloning and phylogenetic analysis of phytoene synthase 1 (Psy1) genes in common wheat and related species (Record no. 27841)

MARC details
000 -LEADER
fixed length control field 03907nab a22004217a 4500
001 - CONTROL NUMBER
control field G93430
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20220523225447.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 220523s2009 xxk|||p|op||| 00| 0 eng d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 0018-0661
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1601-5223 (Online)
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1111/j.1601-5223.2009.02132.x
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) CIS-5610
100 1# - MAIN ENTRY--PERSONAL NAME
9 (RLIN) 842
Personal name Jiankang Wang
Miscellaneous information Genetic Resources Program
Field link and sequence number INT2542
245 10 - TITLE STATEMENT
Title Cloning and phylogenetic analysis of phytoene synthase 1 (Psy1) genes in common wheat and related species
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. United Kingdom :
Name of publisher, distributor, etc. Wiley,
Date of publication, distribution, etc. 2009.
500 ## - GENERAL NOTE
General note Peer-review: Yes - Open Access: Yes|http://science.thomsonreuters.com/cgi-bin/jrnlst/jlresults.cgi?PC=MASTER&ISSN=0018-0661
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Open Access
520 ## - SUMMARY, ETC.
Summary, etc. Cloning and phylogenetic analysis of Psy1 genes in common wheat and its relatives would help to understand the genetic diversity and evolution of Psy1 gene in common wheat and its related species. In the present study, common wheat (AABBDD) and eight relative species, including T. urartu (AuAu), T. boeoticum (AmAm), T. monococcum (AmAm), Ae. speltoides (SS), Ae. tauschii (DD), T. dicoccoides (AABB), T. dicoccum (AABB) and T. spelta (AABBDD), were sampled for the isolation of novel alleles at Psy1-A1, Psy1-B1/Psy1-S1 and Psy1-D1 loci corresponding to common wheat Psy1 genes, and 27 new alleles were identified at these loci, designated Psy1-A1f through Psy1-A1k, Psy1-A1m and Psy1-A1n, Psy1-B1h through Psy1-B1m, Psy1-S1a through Psy1-S1c, Psy1-D1a through Psy1-D1j, respectively. The genes contained six exons and five introns, and the sequences of exons were more conserved compared with those of introns. The Psy1-A1 genes encoded a polypeptide of 428 aminoacid residues, with one residue longer than those encoded by Psy1-D1 genes. The Psy1-B1/Psy1-S1 genes encoded four types of polypeptides, with 421 (Psy1-B1h through Psy1-B1j, Psy1-B1l), 427 (Psy1-B1k, Psy1-S1a and Psy1-S1c), 428 (Psy1-B1m), and 429 (Psy1-S1b) aminoacid residues, respectively. Neighbor joining tree was generated based on the gene sequences of the 27 novel alleles and those of the 13 alleles reported previously in common wheat and its relatives. The phylogenetic tree consisted of two subtrees. The subtree I comprised 11 of 14 alleles at Psy1-A1 locus, nine of 16 alleles at Psy1-B1/Psy1-S1 locus, and ten novel alleles at Psy1-D1 locus, while the subtree II included the other three alleles at Psy1-A1 locus, the remaining four Psy1-B1 alleles and three Psy1-S1 alleles. The alleles from different clusters showed high sequence divergences, indicated by various SNPs and InDels (insertion/deletion). The phylogenetic relationships of these allelic variants at the three loci in common wheat and its relatives also supported the hypothesis that common wheat was originated by recurrent hexaploidization events. In addition, 193 Chinese wheat cultivars with different yellow pigment contents were genotyped with two novel STS markers YP7D-1 and YP7D-2. The results indicated that 191 cultivars contained the allele Psy1-D1a, and two had Psy1-D1g.
536 ## - FUNDING INFORMATION NOTE
Text of note Genetic Resources Program|Global Wheat Program
546 ## - LANGUAGE NOTE
Language note Text in English
594 ## - STAFFID
StaffID INT2411|INT3297|INT2411|INT2542
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Wheat
Source of heading or term AGROVOC
9 (RLIN) 1310
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 5948
Topical term or geographic name as entry element Cloning
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 9129
Topical term or geographic name as entry element Phylogeny
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 1937
Topical term or geographic name as entry element Nucleotide sequence
Source of heading or term AGROVOC
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
9 (RLIN) 2185
Topical term or geographic name as entry element Alleles
Source of heading or term AGROVOC
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 913
Personal name Xinyao He
Miscellaneous information Global Wheat Program
Field link and sequence number INT3297
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name He Zhonghu
Miscellaneous information Global Wheat Program
Field link and sequence number INT2411
9 (RLIN) 838
700 0# - ADDED ENTRY--PERSONAL NAME
Personal name Hui Wang
9 (RLIN) 4189
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 377
Personal name Xianchun Xia
773 0# - HOST ITEM ENTRY
Title Hereditas
Related parts v. 146, no. 5, p. 208-256
Place, publisher, and date of publication United Kingdom : Wiley, 2009.
Record control number G444334
International Standard Serial Number 1601-5223
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Open Access through DSpace
Uniform Resource Identifier http://hdl.handle.net/10883/1776
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Source of classification or shelving scheme Dewey Decimal Classification
Suppress in OPAC No
Holdings
Date last seen Total Checkouts Full call number Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
07/05/2017   CIS-5610 07/05/2017 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 07/05/2017

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