Knowledge Center Catalog

Predicting quantitative traits with regression models for dense molecular markers and pedigree (Record no. 27814)

MARC details
000 -LEADER
fixed length control field 02914nab a22004457a 4500
001 - CONTROL NUMBER
control field G93400
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20240919020946.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 210804t2009 xxu|||p|op||| 00| 0 eng d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1943-2631 (Online)
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 0016-6731
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1534/genetics.109.101501
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) CIS-5581
100 1# - MAIN ENTRY--PERSONAL NAME
9 (RLIN) 2349
Personal name De los Campos, G.
Miscellaneous information Genetic Resources Program
Field link and sequence number CCAG01
245 10 - TITLE STATEMENT
Title Predicting quantitative traits with regression models for dense molecular markers and pedigree
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. USA :
Name of publisher, distributor, etc. Genetics Society of America,
Date of publication, distribution, etc. 2009.
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Peer-review: Yes - Open Access: Yes|http://science.thomsonreuters.com/cgi-bin/jrnlst/jlresults.cgi?PC=MASTER&ISSN=1943-2631
520 ## - SUMMARY, ETC.
Summary, etc. The availability of genomewide dense markers brings opportunities and challenges to breeding programs. An important question concerns the ways in which dense markers and pedigrees, together with phenotypic records, should be used to arrive at predictions of genetic values for complex traits. If a large number of markers are included in a regression model, marker-specific shrinkage of regression coefficients may be needed. For this reason, the Bayesian least absolute shrinkage and selection operator (LASSO) (BL) appears to be an interesting approach for fitting marker effects in a regression model. This article adapts the BL to arrive at a regression model where markers, pedigrees, and covariates other than markers are considered jointly. Connections between BL and other marker-based regression models are discussed, and the sensitivity of BL with respect to the choice of prior distributions assigned to key parameters is evaluated using simulation. The proposed model was fitted to two data sets from wheat and mouse populations, and evaluated using cross-validation methods. Results indicate that inclusion of markers in the regression further improved the predictive ability of models. An R program that implements the proposed model is freely available.
536 ## - FUNDING INFORMATION NOTE
Text of note Genetic Resources Program
546 ## - LANGUAGE NOTE
Language note Text in English
594 ## - STAFFID
StaffID CCAG01|CCJL01
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 1848
Topical term or geographic name as entry element Genetic markers
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 5834
Topical term or geographic name as entry element Regression analysis
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 5834
Topical term or geographic name as entry element Regression analysis
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 22812
Topical term or geographic name as entry element Pedigrees
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 1853
Topical term or geographic name as entry element Quantitative Trait Loci
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Naya, H.
9 (RLIN) 21837
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Gianola, D.
9 (RLIN) 7797
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Crossa, J.
Miscellaneous information Genetic Resources Program
Field link and sequence number CCJL01
9 (RLIN) 59
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 6003
Personal name Legarra, A.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 21838
Personal name Manfredi, E.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 21839
Personal name Weigel, K.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 21792
Personal name Cotes, J.M.
773 0# - HOST ITEM ENTRY
Title Genetics
Related parts v. 182, no. 1, p. 375-385
Place, publisher, and date of publication USA : Genetics Society of America, 2009.
Record control number G444332
International Standard Serial Number 1943-2631
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Access only for CIMMYT Staff
Uniform Resource Identifier https://hdl.handle.net/20.500.12665/348
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Source of classification or shelving scheme Dewey Decimal Classification
Suppress in OPAC No
Holdings
Date last seen Total Checkouts Full call number Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
07/05/2017   CIS-5581 07/05/2017 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 07/05/2017

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