Knowledge Center Catalog

Distribution of DArT, AFLP, and SSR markers in a genetic linkage map of a doubled-haploid hexaploid wheat population (Record no. 26346)

MARC details
000 -LEADER
fixed length control field 03263nab a22004337a 4500
001 - CONTROL NUMBER
control field G89314
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20230918180440.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 210617s2006 xxc|||p|op||| 00| 0 eng d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1480-3321 (Online)
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 0831-2796
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1139/g06-002
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) CIS-4789
100 1# - MAIN ENTRY--PERSONAL NAME
9 (RLIN) 869
Personal name Fentaye Kassa Semagn
Miscellaneous information Global Maize Program
Field link and sequence number INT2869
245 10 - TITLE STATEMENT
Title Distribution of DArT, AFLP, and SSR markers in a genetic linkage map of a doubled-haploid hexaploid wheat population
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. Ontario (Canada) :
Name of publisher, distributor, etc. Canadian Science Publishing,
Date of publication, distribution, etc. 2006.
340 ## - PHYSICAL MEDIUM
Material base and configuration Computer File|Printed
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Peer-review: Yes - Open Access: Yes|http://science.thomsonreuters.com/cgi-bin/jrnlst/jlresults.cgi?PC=MASTER&ISSN=0831-2796
520 ## - SUMMARY, ETC.
Summary, etc. A genetic linkage mapping study was conducted in 93 doubled-haploid lines derived from a cross between Triticum aestivum L. em. Thell 'Arina' and a Norwegian spring wheat breeding line, NK93604, using diversity arrays technology (DArT), amplified fragment length polymorphism (AFLP), and simple sequence repeat (SSR) markers. The objective of this study was to understand the distribution, redundancy, and segregation distortion of DArT markers in comparison with AFLP and SSR markers. The map contains a total of 624 markers with 189 DArTs, 165 AFLPs and 270 SSRs, and spans 2595.5 cM. All 3 marker types showed significant (p < 0.01) segregation distortion, but it was higher for AFLPs (24.2%) and SSRs (22.6%) than for DArTs (13.8%). The overall segregation distortion was 20.4%. DArTs showed the highest frequency of clustering (27.0%) at < 0.5 cM intervals between consecutive markers, which is 3 and 15 times higher than SSRs (8.9%) and AFLPs (1.8%), respectively. This high proportion of clustering of DArT markers may be indicative of gene-rich regions and (or) the result of inclusion of redundant clones in the genomic representations, which was supported by the presence of very high correlation coefficients (r > 0.98) and multicollinearity among the clustered markers. The present study is the first to compare the utility of DArT with AFLP and SSR markers, and the present map has been successfully used to identify novel QTLs for resistance to Fusarium head blight and powdery mildew and for anther extrusion, leaf segment incubation, and latency.Key words: 'Arina', diversity arrays technology, double haploid, genetic map, marker clustering, microsatellite.
536 ## - FUNDING INFORMATION NOTE
Text of note Global Maize Program
546 ## - LANGUAGE NOTE
Language note Text in English
594 ## - STAFFID
StaffID INT2869
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 1130
Topical term or geographic name as entry element Genetics
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 1925
Topical term or geographic name as entry element Haploidy
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 4190
Topical term or geographic name as entry element Genetic maps
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 1848
Topical term or geographic name as entry element Genetic markers
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Source of heading or term AGROVOC
9 (RLIN) 2261
Topical term or geographic name as entry element Microsatellites
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Bjornstad, A.
9 (RLIN) 3914
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Skinnes, H.
9 (RLIN) 5683
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Maroy, A.G.
9 (RLIN) 20367
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Tarkegne, Y.
9 (RLIN) 20368
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name William, M.
9 (RLIN) 20362
773 0# - HOST ITEM ENTRY
Title Genome
Note 634265
Related parts v. 49, no. 5, p. 545-555
Place, publisher, and date of publication Ontario (Canada) : Canadian Science Publishing, 2006.
Record control number G444552
International Standard Serial Number 0831-2796
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Access only for CIMMYT Staff
Uniform Resource Identifier https://hdl.handle.net/20.500.12665/755
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Source of classification or shelving scheme Dewey Decimal Classification
Suppress in OPAC No
Holdings
Date last seen Total Checkouts Full call number Barcode Copy number Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
02/10/2015   CIS-4789 634265 1 02/10/2015 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 02/10/2015

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