Knowledge Center Catalog

Development and mapping of microsatellite (SSR) markers in wheat (Record no. 26153)

MARC details
000 -LEADER
fixed length control field 03161nab a22004217a 4500
001 - CONTROL NUMBER
control field G83021
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20171220113520.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 121211b |||p||p||||||| |z||| |
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1432-2242 (Revista en electrónico)
022 0# - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 0040-5752
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.1007/s00122-004-1871-x
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 0# - LANGUAGE CODE
Language code of text/sound track or separate title En
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) REP-12519
100 1# - MAIN ENTRY--PERSONAL NAME
Personal name Song, Q.J.
245 00 - TITLE STATEMENT
Title Development and mapping of microsatellite (SSR) markers in wheat
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Date of publication, distribution, etc. 2005
340 ## - PHYSICAL MEDIUM
Material base and configuration Printed|Computer File
500 ## - GENERAL NOTE
General note Peer-review: Yes - Open Access: Yes |http://science.thomsonreuters.com/cgi-bin/jrnlst/jlresults.cgi?PC=MASTER&ISSN=0040-5752
520 ## - SUMMARY, ETC.
Summary, etc. Microsatellite DNA markers are consistently found to be more informative than other classes of markers in hexaploid wheat. The objectives of this research were to develop new primers flanking wheat microsatellites and to position the associated loci on the wheat genome map by genetic linkage mapping in the ITMI W7984 × Opata85 recombinant inbred line (RIL) population and/or by physical mapping with cytogenetic stocks. We observed that the efficiency of marker development could be increased in wheat by creating libraries from sheared rather than enzyme-digested DNA fragments for microsatellite screening, by focusing on microsatellites with the [ATT/TAA] n motif, and by adding an untemplated G-C clamp to the 5′-end of primers. A total of 540 microsatellite-flanking primer pairs were developed, tested, and annotated from random genomic libraries. Primer pairs and associated loci were assigned identifiers prefixed with BARC (the acronym for the USDA-ARS Beltsville Agricultural Research Center) or Xbarc, respectively. A subset of 315 primer sets was used to map 347 loci. One hundred and twenty-five loci were localized by physical mapping alone. Of the 222 loci mapped with the ITMI population, 126 were also physically mapped. Considering all mapped loci, 126, 125, and 96 mapped to the A, B, and D genomes, respectively. Twenty-three of the new loci were positioned in gaps larger than 10 cM in the map based on pre-existing markers, and 14 mapped to the ends of chromosomes. The length of the linkage map was extended by 80.7 cM. Map positions were consistent for 111 of the 126 loci positioned by both genetic and physical mapping. The majority of the 15 discrepancies between genetic and physical mapping involved chromosome group 5.
536 ## - FUNDING INFORMATION NOTE
Text of note Genetic Resources Program|Global Wheat Program
546 ## - LANGUAGE NOTE
Language note English
591 ## - CATALOGING NOTES
Affiliation Springer|0406|No CIMMYT affiliation
594 ## - STAFFID
StaffID INT2733|INT3098
595 ## - COLLECTION
Collection Reprints Collection
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Costa, J.M.,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Cregan, P.B.,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Fickus, E.W.,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Gill, B.S.,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Lewis, J.,
Relator term coaut.
9 (RLIN) 2354
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Shi, J.R,
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 892
Personal name Sukhwinder-Singh
Miscellaneous information Genetic Resources Program
Field link and sequence number INT3098
Relator term coaut.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 856
Personal name Ward, R.W.
Miscellaneous information Global Wheat Program
Field link and sequence number INT2733
Relator term coaut.
773 0# - HOST ITEM ENTRY
Title Theoretical and Applied Genetics
Note 633946
Related parts v. 110, no. 3, p. 550-560
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Holdings
Date last seen Total Checkouts Full call number Barcode Copy number Price effective from Koha item type Lost status Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
02/10/2015   REP-12519 633946 1 02/10/2015 Article Not Lost     Reprints Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 02/10/2015

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