Knowledge Center Catalog

Spatial analysis of cDNA microarray experiments (Record no. 25315)

MARC details
000 -LEADER
fixed length control field 02606nab a22004217a 4500
001 - CONTROL NUMBER
control field G81360
003 - CONTROL NUMBER IDENTIFIER
control field MX-TxCIM
005 - DATE AND TIME OF LATEST TRANSACTION
control field 20240919020945.0
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION
fixed length control field 210727s2005 xxu|||p|op||| 00| 0 eng d
022 ## - INTERNATIONAL STANDARD SERIAL NUMBER
International Standard Serial Number 1435-0653 (Online)
024 8# - OTHER STANDARD IDENTIFIER
Standard number or code https://doi.org/10.2135/cropsci2005.0748
040 ## - CATALOGING SOURCE
Original cataloging agency MX-TxCIM
041 ## - LANGUAGE CODE
Language code of text/sound track or separate title eng
072 #0 - SUBJECT CATEGORY CODE
Subject category code A50
072 #0 - SUBJECT CATEGORY CODE
Subject category code F30
090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN)
Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) CIS-4366
100 1# - MAIN ENTRY--PERSONAL NAME
9 (RLIN) 907
Personal name BurgueƱo, J.
Miscellaneous information Genetic Resources Program
Field link and sequence number INT3239
245 10 - TITLE STATEMENT
Title Spatial analysis of cDNA microarray experiments
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT)
Place of publication, distribution, etc. USA :
Name of publisher, distributor, etc. CSSA :
-- Wiley,
Date of publication, distribution, etc. 2005.
340 ## - PHYSICAL MEDIUM
Material base and configuration Computer File|Printed
500 ## - GENERAL NOTE
General note Peer review
500 ## - GENERAL NOTE
General note Peer-review: Yes - Open Access: Yes|http://science.thomsonreuters.com/cgi-bin/jrnlst/jlresults.cgi?PC=MASTER&ISSN=0011-183X
520 ## - SUMMARY, ETC.
Summary, etc. Microarray experiments allow RNA level measurements for many genes in multiple samples. However, mining the biological information from the large sets of data generated by microarrays requires the use of appropriate statistical methods to adjust the observed values for experimentally introduced variability (normalization process) before testing differences among samples. Normalization of microarray experiments is a critical step for reducing false positives and false negatives. This paper explores the normalization of cDNA microarray experiments by a method that uses the blank spot intensity values to make spatial adjustment (SA) of both foreground and background DNA spot intensity values, by fitting an autoregressive mixed linear model through the residual maximum likelihood (REML) methodology in the direction of the rows and the columns of the microarray. Application of this spatial normalization to three cDNA array experiments serves as a case study to validate the SA. Results show that the spatial analysis allows selection of candidate genes with lesser numbers of false positive and false negative genes.
536 ## - FUNDING INFORMATION NOTE
Text of note Genetic Resources Program
546 ## - LANGUAGE NOTE
Language note Text in English
591 ## - CATALOGING NOTES
Affiliation 0503|Crop Science Society of America (CSSA)|AL-ABC Program
594 ## - STAFFID
StaffID INT3239|CCJL01
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element cDNA libraries
Source of heading or term AGROVOC
9 (RLIN) 26129
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Arrays
Source of heading or term AGROVOC
9 (RLIN) 27641
650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM
Topical term or geographic name as entry element Genes
Source of heading or term AGROVOC
9 (RLIN) 3563
700 1# - ADDED ENTRY--PERSONAL NAME
Personal name Crossa, J.
Miscellaneous information Genetic Resources Program
Field link and sequence number CCJL01
9 (RLIN) 59
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 20329
Personal name Grimanelli, D.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 20332
Personal name Leblanc, O.
700 1# - ADDED ENTRY--PERSONAL NAME
9 (RLIN) 21678
Personal name Autran, D.
773 0# - HOST ITEM ENTRY
Title Crop Science
Note 630716
Related parts v. 45, no. 2, p. 748-757
Place, publisher, and date of publication USA : CSSA : Wiley, 2005.
Record control number G444244
International Standard Serial Number 1435-0653
856 4# - ELECTRONIC LOCATION AND ACCESS
Link text Access only for CIMMYT Staff
Uniform Resource Identifier https://hdl.handle.net/20.500.12665/313
942 ## - ADDED ENTRY ELEMENTS (KOHA)
Koha item type Article
Source of classification or shelving scheme Dewey Decimal Classification
Suppress in OPAC No
Holdings
Date last seen Total Checkouts Full call number Barcode Copy number Price effective from Koha item type Lost status Source of classification or shelving scheme Damaged status Not for loan Collection code Withdrawn status Home library Current library Date acquired
02/10/2015   CIS-4366 630716 1 02/10/2015 Article Not Lost Dewey Decimal Classification     CIMMYT Staff Publications Collection   CIMMYT Knowledge Center: John Woolston Library CIMMYT Knowledge Center: John Woolston Library 02/10/2015

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