MARC details
| 000 -LEADER |
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| fixed length control field |
03651nab a22004697a 4500 |
| 001 - CONTROL NUMBER |
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| control field |
G81121 |
| 003 - CONTROL NUMBER IDENTIFIER |
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| control field |
MX-TxCIM |
| 005 - DATE AND TIME OF LATEST TRANSACTION |
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| control field |
20230921184207.0 |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION |
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| fixed length control field |
210727s2004 ne |||p|op||| 00| 0 eng d |
| 022 ## - INTERNATIONAL STANDARD SERIAL NUMBER |
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| International Standard Serial Number |
0167-4412 |
| 022 ## - INTERNATIONAL STANDARD SERIAL NUMBER |
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| International Standard Serial Number |
1573-5028 (Online) |
| 024 8# - OTHER STANDARD IDENTIFIER |
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| Standard number or code |
https://doi.org/10.1007/s11103-004-4950-0 |
| 040 ## - CATALOGING SOURCE |
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| Original cataloging agency |
MX-TxCIM |
| 041 ## - LANGUAGE CODE |
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| Language code of text/sound track or separate title |
eng |
| 072 #0 - SUBJECT CATEGORY CODE |
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| Subject category code |
A50 |
| 072 #0 - SUBJECT CATEGORY CODE |
|---|
| Subject category code |
F30 |
| 090 ## - LOCALLY ASSIGNED LC-TYPE CALL NUMBER (OCLC); LOCAL CALL NUMBER (RLIN) |
|---|
| Classification number (OCLC) (R) ; Classification number, CALL (RLIN) (NR) |
CIS-4265 |
| 100 1# - MAIN ENTRY--PERSONAL NAME |
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| Personal name |
Sawkins, M. C. |
| 9 (RLIN) |
6567 |
| 245 10 - TITLE STATEMENT |
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| Title |
Comparative map and trait viewer (CMTV) : |
| Remainder of title |
an integrated bioimformatic tool to construct consensus maps and compare QTL and functional genomics data across genomes and experiments |
| 260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT) |
|---|
| Place of publication, distribution, etc. |
Dordrecht (Netherlands) : |
| Name of publisher, distributor, etc. |
Springer, |
| Date of publication, distribution, etc. |
2004. |
| 340 ## - PHYSICAL MEDIUM |
|---|
| Material base and configuration |
Computer File |
| 500 ## - GENERAL NOTE |
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| General note |
Peer review |
| 500 ## - GENERAL NOTE |
|---|
| General note |
Peer-review: Yes - Open Access: Yes|http://science.thomsonreuters.com/cgi-bin/jrnlst/jlresults.cgi?PC=MASTER&ISSN=0167-4412 |
| 520 ## - SUMMARY, ETC. |
|---|
| Summary, etc. |
In the past few decades, a wealth of genomic data has been produced in a wide variety of species using a diverse array of functional and molecular marker approaches. In order to unlock the full potential of the information contained in these independent experiments, researchers need efficient and intuitive means to identify common genomic regions and genes involved in the expression of target phenotypic traits across diverse conditions. To address this need, we have developed a Comparative Map and Trait Viewer (CMTV) tool that can be used to construct dynamic aggregations of a variety of types of genomic datasets. By algorithmically determining correspondences between sets of objects on multiple genomic maps, the CMTV can display syntenic regions across taxa, combine maps from separate experiments into a consensus map, or project data from different maps into a common coordinate framework using dynamic coordinate translations between source and target maps. We present a case study that illustrates the utility of the tool for managing large and varied datasets by integrating data collected by CIMMYT in maize drought tolerance research with data from public sources. This example will focus on one of the visualization features for Quantitative Trait Locus (QTL) data, using likelihood ratio (LR) files produced by generic QTL analysis software and displaying the data in a unique visual manner across different combinations of traits, environments and crosses. Once a genomic region of interest has been identified, the CMTV can search and display additional QTLs meeting a particular threshold for that region, or other functional data such as sets of differentially expressed genes located in the region; it thus provides an easily used means for organizing and manipulating data sets that have been dynamically integrated under the focus of the researcher’s specific hypothesis. |
| 536 ## - FUNDING INFORMATION NOTE |
|---|
| Text of note |
Generation Challenge Program |
| 546 ## - LANGUAGE NOTE |
|---|
| Language note |
Text in English |
| 591 ## - CATALOGING NOTES |
|---|
| Affiliation |
0501|AL-ABC Program |
| 594 ## - STAFFID |
|---|
| StaffID |
INT1991 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Genes |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
3563 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Bioinformatics |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
8703 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Marker-assisted selection |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
10737 |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM |
|---|
| Topical term or geographic name as entry element |
Quantitative Trait Loci |
| Source of heading or term |
AGROVOC |
| 9 (RLIN) |
1853 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Farmer, A.D. |
| 9 (RLIN) |
21654 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Hoisington, D. |
| 9 (RLIN) |
3643 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Sullivan, J. |
| 9 (RLIN) |
21655 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Tolopko, A. |
| 9 (RLIN) |
21656 |
| 700 0# - ADDED ENTRY--PERSONAL NAME |
|---|
| Personal name |
Zhikai Jiang |
| 9 (RLIN) |
18308 |
| 700 1# - ADDED ENTRY--PERSONAL NAME |
|---|
| 9 (RLIN) |
835 |
| Personal name |
Ribaut, J.M. |
| Miscellaneous information |
Integrated Breeding Platform |
| Field link and sequence number |
INT1991 |
| 773 0# - HOST ITEM ENTRY |
|---|
| Title |
Plant Molecular Biology |
| Note |
630552 |
| Related parts |
v. 56, no. 3, p. 465-480 |
| Place, publisher, and date of publication |
Dordrecht (Netherlands) : Springer, 2004. |
| Record control number |
G445698 |
| International Standard Serial Number |
0167-4412 |
| 856 4# - ELECTRONIC LOCATION AND ACCESS |
|---|
| Link text |
Access only for CIMMYT Staff |
| Uniform Resource Identifier |
https://hdl.handle.net/20.500.12665/320 |
| 942 ## - ADDED ENTRY ELEMENTS (KOHA) |
|---|
| Koha item type |
Article |
| Source of classification or shelving scheme |
Dewey Decimal Classification |
| Suppress in OPAC |
No |